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Sodium in PDB 4wxp: X-Ray Crystal Structure of NS3 Helicase From Hcv with A Bound Fragment Inhibitor at 2.08 A Resolution

Protein crystallography data

The structure of X-Ray Crystal Structure of NS3 Helicase From Hcv with A Bound Fragment Inhibitor at 2.08 A Resolution, PDB code: 4wxp was solved by D.R.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.57 / 2.08
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 92.444, 92.444, 104.133, 90.00, 90.00, 120.00
R / Rfree (%) 18 / 23.2

Other elements in 4wxp:

The structure of X-Ray Crystal Structure of NS3 Helicase From Hcv with A Bound Fragment Inhibitor at 2.08 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Crystal Structure of NS3 Helicase From Hcv with A Bound Fragment Inhibitor at 2.08 A Resolution (pdb code 4wxp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Crystal Structure of NS3 Helicase From Hcv with A Bound Fragment Inhibitor at 2.08 A Resolution, PDB code: 4wxp:

Sodium binding site 1 out of 1 in 4wxp

Go back to Sodium Binding Sites List in 4wxp
Sodium binding site 1 out of 1 in the X-Ray Crystal Structure of NS3 Helicase From Hcv with A Bound Fragment Inhibitor at 2.08 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Crystal Structure of NS3 Helicase From Hcv with A Bound Fragment Inhibitor at 2.08 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na701

b:71.4
occ:1.00
O A:HOH802 2.8 46.6 1.0
OD1 A:ASN387 3.2 61.1 1.0
CA A:ASN387 4.2 57.4 1.0
CG A:ASN387 4.2 59.6 1.0
N A:ALA388 4.5 59.7 1.0
O A:ALA388 4.5 64.1 1.0
O A:LEU386 4.6 60.0 1.0
CB A:ASN387 4.7 60.3 1.0
C A:ASN387 4.8 58.7 1.0

Reference:

B.O.Buckman, K.Kossen, S.Misialek, S.Stevens, R.Rajagopalan, D.Ruhmund, L.Hooi, N.Snarskaya, V.Serebryany, G.Wang, A.Stoycheva, J.B.Nicholas, D.R.Davies, S.Brunton, C.Montalbetti, D.Weddell, C.Goodwin, D.Schonfeld, O.Mather, R.Cheng, L.Blatt, L.Beigelman. Crystal Structure of NS3 Helicase From Hcv with A Bound Fragment Inhibitor To Be Published.
Page generated: Mon Oct 7 18:56:29 2024

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