Sodium in PDB 4wpk: Crystal Structure of Mycobacterium Tuberculosis Uracil-Dna Glycosylase, Form I

All present enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Uracil-Dna Glycosylase, Form I:
3.2.2.27;

The structure of Crystal Structure of Mycobacterium Tuberculosis Uracil-Dna Glycosylase, Form I, PDB code: 4wpk was solved by S.M.Arif, K.Geethanandan, P.Mishra, A.Surolia, U.Varshney, M.Vijayan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.74 / 0.98
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	38.919, 63.473, 45.186, 90.00, 112.89, 90.00
R / Rfree (%)	13.7 / 15.4

The binding sites of Sodium atom in the Crystal Structure of Mycobacterium Tuberculosis Uracil-Dna Glycosylase, Form I (pdb code 4wpk). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Mycobacterium Tuberculosis Uracil-Dna Glycosylase, Form I, PDB code: 4wpk:

Sodium binding site 1 out of 1 in the Crystal Structure of Mycobacterium Tuberculosis Uracil-Dna Glycosylase, Form I


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mycobacterium Tuberculosis Uracil-Dna Glycosylase, Form I within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:7.0 occ:1.00 O A:HOH587 3.1 10.8 1.0 O A:HOH581 3.2 8.5 1.0 O A:HOH625 3.3 19.0 1.0 N A:PHE81 3.3 5.6 1.0 ND2 A:ASN127 3.4 8.0 1.0 N A:TYR70 3.5 7.2 1.0 CA A:PRO69 3.6 6.6 1.0 CD2 A:TYR70 3.7 6.9 1.0 CA A:SER80 3.9 6.8 1.0 O A:HOH589 3.9 11.2 1.0 O A:LEU79 4.0 8.6 1.0 CE2 A:TYR70 4.0 7.0 1.0 C A:PRO69 4.1 6.9 1.0 C A:SER80 4.1 6.1 1.0 CA A:PHE81 4.1 6.3 1.0 CB A:PRO69 4.2 7.2 1.0 CG A:TYR70 4.3 7.3 1.0 CB A:ALA76 4.3 10.0 1.0 O A:ASP68 4.4 7.2 1.0 C A:LEU79 4.5 7.0 1.0 N A:SER80 4.5 6.5 1.0 CG A:ASN127 4.5 7.9 1.0 CA A:ALA76 4.6 8.6 1.0 N A:PRO69 4.7 6.2 1.0 O A:HOH580 4.7 8.0 1.0 CA A:TYR70 4.7 7.6 1.0 C A:PHE81 4.7 6.3 1.0 N A:SER82 4.7 6.5 1.0 CB A:TYR70 4.7 7.7 1.0 OD1 A:ASN127 4.8 8.7 1.0 O A:SER82 4.8 8.2 1.0 CZ A:TYR70 4.8 7.2 1.0 C A:ASP68 4.9 6.3 1.0 CB A:SER80 5.0 8.3 1.0

S.M.Arif, K.Geethanandan, P.Mishra, A.Surolia, U.Varshney, M.Vijayan. Structural Plasticity in Mycobacterium Tuberculosis Uracil-Dna Glycosylase (Mtung) and Its Functional Implications. Acta Crystallogr.,Sect.D V. 71 1514 2015.
ISSN: ESSN 1399-0047
PubMed: 26143923
DOI: 10.1107/S1399004715009311