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Sodium in PDB 4woj: Aspartate Semialdehyde Dehydrogenase From Francisella Tularensis

Protein crystallography data

The structure of Aspartate Semialdehyde Dehydrogenase From Francisella Tularensis, PDB code: 4woj was solved by N.J.Mank, A.K.Arnette, V.G.Klapper, M.Chruszcz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.22 / 2.45
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 46.587, 60.573, 67.684, 115.43, 100.98, 91.74
R / Rfree (%) 18.3 / 23.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Aspartate Semialdehyde Dehydrogenase From Francisella Tularensis (pdb code 4woj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Aspartate Semialdehyde Dehydrogenase From Francisella Tularensis, PDB code: 4woj:

Sodium binding site 1 out of 1 in 4woj

Go back to Sodium Binding Sites List in 4woj
Sodium binding site 1 out of 1 in the Aspartate Semialdehyde Dehydrogenase From Francisella Tularensis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Aspartate Semialdehyde Dehydrogenase From Francisella Tularensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na402

b:31.6
occ:1.00
O B:VAL300 2.0 22.7 1.0
O B:HOH501 2.2 36.7 1.0
C B:VAL300 3.0 23.4 1.0
CA B:VAL300 3.8 22.5 1.0
N B:VAL300 3.9 21.8 1.0
CB B:VAL300 4.0 20.1 1.0
N B:ILE301 4.0 25.9 1.0
O B:HOH503 4.2 22.8 1.0
CA B:ILE301 4.3 26.4 1.0
CG1 B:VAL300 4.4 20.4 1.0
N B:ASP302 4.8 29.8 1.0
C B:LYS299 4.8 22.0 1.0
CD1 B:ILE301 4.9 28.1 1.0
C B:ILE301 5.0 29.5 1.0

Reference:

N.J.Mank, S.Pote, K.A.Majorek, A.K.Arnette, V.G.Klapper, B.K.Hurlburt, M.Chruszcz. Structure of Aspartate B-Semialdehyde Dehydrogenase From Francisella Tularensis Acta Crystallogr.,Sect.F V. 74 14 2018.
ISSN: ESSN 2053-230X
DOI: 10.1107/S2053230X17017241
Page generated: Sun Aug 17 22:08:25 2025

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