Sodium in PDB 4wld: High Pressure Protein Crystallography of Hen Egg White Lysozyme at 0.1 Mpa

All present enzymatic activity of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 0.1 Mpa:
3.2.1.17;

The structure of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 0.1 Mpa, PDB code: 4wld was solved by H.Yamada, T.Nagae, N.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.81 / 1.54
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.197, 79.197, 37.900, 90.00, 90.00, 90.00
R / Rfree (%)	14.8 / 17.9

The binding sites of Sodium atom in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 0.1 Mpa (pdb code 4wld). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 0.1 Mpa, PDB code: 4wld:

Sodium binding site 1 out of 1 in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 0.1 Mpa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 0.1 Mpa within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:30.3 occ:1.00 OG A:SER72 2.3 38.4 1.0 O A:SER60 2.3 22.2 1.0 O A:HOH380 2.4 39.7 1.0 O A:ARG73 2.4 38.5 1.0 O A:CYS64 2.6 19.2 1.0 O A:HOH366 2.6 24.3 1.0 CB A:SER72 3.0 42.1 1.0 C A:ARG73 3.5 32.5 1.0 C A:SER60 3.5 19.1 1.0 C A:CYS64 3.5 18.6 1.0 N A:ARG73 3.9 32.6 1.0 C A:SER72 3.9 38.3 1.0 CA A:ASN65 4.0 21.0 1.0 CA A:SER72 4.0 42.1 1.0 N A:ASN65 4.2 19.1 1.0 CA A:SER60 4.2 16.0 1.0 O A:ARG61 4.3 27.0 1.0 N A:ASN74 4.3 28.9 1.0 C A:ARG61 4.3 26.2 1.0 CA A:ARG73 4.3 32.3 1.0 O A:SER72 4.4 35.6 1.0 N A:CYS64 4.4 18.3 1.0 CA A:ASN74 4.5 24.0 1.0 N A:ARG61 4.5 20.8 1.0 CB A:SER60 4.5 16.3 1.0 CA A:ARG61 4.6 23.9 1.0 CA A:CYS64 4.6 19.1 1.0 OD1 A:ASN65 4.6 30.4 1.0 CB A:ASN74 4.7 25.1 1.0 O A:HOH367 4.7 26.7 1.0 N A:TRP62 4.7 22.6 1.0 CB A:THR69 4.7 20.7 1.0 CB A:ASN65 4.8 23.2 1.0 N A:ASP66 4.8 17.1 1.0 O A:THR69 4.9 26.2 1.0 N A:SER72 5.0 39.8 1.0 N A:TRP63 5.0 18.3 1.0 C A:ASN65 5.0 17.2 1.0

H.Yamada, T.Nagae, N.Watanabe. High Pressure Protein Crystallography of Hen Egg White Lysozyme Acta Crystallogr.,Sect.D V. 71 2015.
ISSN: ESSN 1399-0047
DOI: 10.1107/S1399004715000292