Sodium in PDB 4wed: Crystal Structure of Abc Transporter Substrate-Binding Protein From Sinorhizobium Meliloti

The structure of Crystal Structure of Abc Transporter Substrate-Binding Protein From Sinorhizobium Meliloti, PDB code: 4wed was solved by I.G.Shabalin, Z.Otwinowski, P.Bacal, M.T.Cymborowski, K.B.Handing, M.Stead, J.Hammonds, M.Ahmed, J.Bonanno, R.Seidel, S.C.Almo, W.Minor, Newyork Structural Genomics Research Consortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.65 / 2.35
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	57.327, 57.327, 132.063, 90.00, 90.00, 120.00
R / Rfree (%)	16.4 / 22.9

The binding sites of Sodium atom in the Crystal Structure of Abc Transporter Substrate-Binding Protein From Sinorhizobium Meliloti (pdb code 4wed). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Abc Transporter Substrate-Binding Protein From Sinorhizobium Meliloti, PDB code: 4wed:

Sodium binding site 1 out of 1 in the Crystal Structure of Abc Transporter Substrate-Binding Protein From Sinorhizobium Meliloti


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Abc Transporter Substrate-Binding Protein From Sinorhizobium Meliloti within 5.0Å range: probe atom residue distance (Å) B Occ A:Na601 b:63.9 occ:1.00 O A:HOH798 2.1 68.7 1.0 OD2 A:ASP62 2.3 59.4 1.0 O A:HOH792 2.4 63.1 1.0 OD1 A:ASP515 2.4 67.9 1.0 O A:HOH793 2.6 60.5 1.0 OD1 A:ASP62 2.7 52.7 1.0 CG A:ASP62 2.9 57.3 1.0 CG A:ASP515 3.4 68.0 1.0 OE2 A:GLU519 3.7 87.9 1.0 CB A:ASP515 3.8 64.2 1.0 CB A:ASP62 4.3 59.4 1.0 CA A:ASP515 4.3 62.0 1.0 OD2 A:ASP515 4.4 74.5 1.0 N A:MSE516 4.6 60.6 1.0 CD A:GLU519 4.7 78.7 1.0 O A:MSE516 4.7 56.8 1.0 CE2 A:TYR518 4.7 60.1 1.0 O A:ASP62 4.8 55.5 1.0 OH A:TYR518 4.8 63.9 1.0 OE1 A:GLU519 4.9 86.0 1.0 O A:HOH723 4.9 69.9 1.0

I.G.Shabalin, K.B.Handing, W.Minor. Crystal Structure of Abc Transporter Substrate-Binding Protein From Sinorhizobium Meliloti To Be Published.