Sodium in PDB 4u1p: Human Fyn-SH2 Domain in Complex with A Synthetic High-Affinity Phospho-Peptide

All present enzymatic activity of Human Fyn-SH2 Domain in Complex with A Synthetic High-Affinity Phospho-Peptide:
2.7.10.2;

The structure of Human Fyn-SH2 Domain in Complex with A Synthetic High-Affinity Phospho-Peptide, PDB code: 4u1p was solved by A.Garcia-Pino, R.Huculeci, T.Lenaerts, N.A.J.Van Nuland, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.00 / 1.40
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	39.248, 39.248, 145.199, 90.00, 90.00, 90.00
R / Rfree (%)	15.1 / 18.8

The binding sites of Sodium atom in the Human Fyn-SH2 Domain in Complex with A Synthetic High-Affinity Phospho-Peptide (pdb code 4u1p). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Human Fyn-SH2 Domain in Complex with A Synthetic High-Affinity Phospho-Peptide, PDB code: 4u1p:

Sodium binding site 1 out of 1 in the Human Fyn-SH2 Domain in Complex with A Synthetic High-Affinity Phospho-Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Human Fyn-SH2 Domain in Complex with A Synthetic High-Affinity Phospho-Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:35.7 occ:1.00 ND2 A:ASN42 2.9 16.3 1.0 O A:GLN36 3.0 13.9 1.0 O A:HIS121 3.1 24.4 0.5 OG A:SER39 3.1 19.8 0.6 CB A:SER39 3.4 12.6 0.6 CB A:SER39 3.5 26.5 0.4 N A:HIS121 3.7 24.2 0.5 SG A:CYS120 3.7 16.8 0.8 CG A:ASN42 3.8 14.8 1.0 C A:HIS121 3.8 26.1 0.5 OD1 A:ASN42 3.9 17.2 1.0 C A:GLN36 4.1 12.4 1.0 OG A:SER39 4.1 26.5 0.4 CA A:HIS121 4.1 27.6 0.5 CB A:HIS121 4.4 31.9 1.0 O A:HOH311 4.5 30.8 0.8 C A:CYS120 4.5 23.1 1.0 O A:HOH338 4.6 45.3 1.0 CA A:SER39 4.8 23.0 0.6 CA A:CYS120 4.8 15.6 1.0 O A:HOH303 4.8 46.1 0.7 CA A:GLN36 4.8 15.2 1.0 CA A:SER39 4.9 11.1 0.4 CB A:CYS120 4.9 16.6 1.0 OE1 A:GLN36 5.0 35.6 1.0 N A:LEU37 5.0 11.3 1.0

A.Garcia-Pino, R.Huculeci, T.Lenaerts, N.A.J.Van Nuland. Human Fyn-SH2 Domain in Complex with A Synthetic High-Affinity Phospho-Peptide To Be Published.