Sodium in PDB 4qgp: Crystal Structure of A Pyrophosphatase (AF1178) From Archaeoglobus Fulgidus Dsm 4304 at 1.80 A Resolution

The structure of Crystal Structure of A Pyrophosphatase (AF1178) From Archaeoglobus Fulgidus Dsm 4304 at 1.80 A Resolution, PDB code: 4qgp was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.20 / 1.78
Space group	I 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	49.168, 102.136, 103.285, 90.00, 90.00, 90.00
R / Rfree (%)	19.4 / 23.8

The structure of Crystal Structure of A Pyrophosphatase (AF1178) From Archaeoglobus Fulgidus Dsm 4304 at 1.80 A Resolution also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Chlorine	(Cl)	1 atom

The binding sites of Sodium atom in the Crystal Structure of A Pyrophosphatase (AF1178) From Archaeoglobus Fulgidus Dsm 4304 at 1.80 A Resolution (pdb code 4qgp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Pyrophosphatase (AF1178) From Archaeoglobus Fulgidus Dsm 4304 at 1.80 A Resolution, PDB code: 4qgp:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Pyrophosphatase (AF1178) From Archaeoglobus Fulgidus Dsm 4304 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Pyrophosphatase (AF1178) From Archaeoglobus Fulgidus Dsm 4304 at 1.80 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na204 b:44.0 occ:1.00 O B:HOH335 2.7 29.9 1.0 O2 B:PGE203 3.1 44.9 1.0 O1 B:PGE203 3.1 40.2 1.0 O3 B:PGE203 3.3 32.6 1.0 O4 B:PGE203 3.4 29.7 1.0 O B:HOH340 3.8 37.4 1.0 C6 B:PGE203 4.0 30.5 1.0 C1 B:PGE203 4.1 44.8 1.0 C2 B:PGE203 4.1 45.5 1.0 C3 B:PGE203 4.1 36.4 1.0 C5 B:PGE203 4.2 31.6 1.0 C4 B:PGE203 4.3 33.5 1.0 C1 B:PG4202 4.4 32.3 1.0 NA B:NA205 4.5 55.0 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Pyrophosphatase (AF1178) From Archaeoglobus Fulgidus Dsm 4304 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Pyrophosphatase (AF1178) From Archaeoglobus Fulgidus Dsm 4304 at 1.80 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na205 b:55.0 occ:1.00 O5 B:PG4202 2.9 44.9 1.0 O4 B:PG4202 3.1 47.3 1.0 O3 B:PG4202 3.2 34.4 1.0 O2 B:PG4202 3.3 28.0 1.0 C1 B:PG4202 3.4 32.3 1.0 O1 B:PG4202 3.5 39.3 1.0 C6 B:PG4202 3.7 38.9 1.0 C7 B:PG4202 3.9 59.2 1.0 C2 B:PG4202 3.9 33.8 1.0 C8 B:PG4202 3.9 60.5 1.0 C3 B:PG4202 4.0 29.5 1.0 C5 B:PG4202 4.1 33.0 1.0 CE2 B:PHE51 4.1 30.2 1.0 CZ B:PHE51 4.2 29.9 1.0 C4 B:PG4202 4.2 25.8 1.0 NA B:NA204 4.5 44.0 1.0 CD2 B:PHE51 4.6 26.5 1.0 CE1 B:PHE51 4.7 26.4 1.0 O B:HOH340 4.8 37.4 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.