Sodium in PDB 4pr8: Urate Oxidase Azide Uric Acid Ternary Complex

All present enzymatic activity of Urate Oxidase Azide Uric Acid Ternary Complex:
1.7.3.3;

The structure of Urate Oxidase Azide Uric Acid Ternary Complex, PDB code: 4pr8 was solved by N.Colloc'h, T.Prange, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	11.00 / 1.16
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	78.577, 95.155, 104.823, 90.00, 90.00, 90.00
R / Rfree (%)	18.4 / n/a

The binding sites of Sodium atom in the Urate Oxidase Azide Uric Acid Ternary Complex (pdb code 4pr8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Urate Oxidase Azide Uric Acid Ternary Complex, PDB code: 4pr8:

Sodium binding site 1 out of 1 in the Urate Oxidase Azide Uric Acid Ternary Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Urate Oxidase Azide Uric Acid Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na405 b:19.1 occ:1.00 O A:HOH1208 2.3 29.4 1.0 O A:ILE88 2.4 21.1 1.0 O A:ILE94 2.4 15.8 1.0 O A:TYR91 2.5 21.0 1.0 OE1 A:GLU136 2.6 34.7 1.0 O A:ASN92 3.0 29.0 1.0 HA A:ASN92 3.2 27.4 1.0 HA A:ILE88 3.3 23.2 1.0 HD1 A:HIS95 3.4 34.1 1.0 C A:ILE88 3.4 20.0 1.0 C A:ILE94 3.5 15.7 1.0 C A:ASN92 3.5 22.8 1.0 H A:ILE94 3.5 23.7 1.0 CD A:GLU136 3.5 59.0 1.0 C A:TYR91 3.6 23.5 1.0 HB A:ILE88 3.6 23.0 1.0 CA A:ASN92 3.7 22.9 1.0 CA A:ILE88 3.8 19.4 1.0 OE2 A:GLU136 3.8 68.1 1.0 HA A:HIS95 3.8 20.4 1.0 N A:ILE94 3.9 19.7 1.0 ND1 A:HIS95 4.0 28.4 1.0 HB A:ILE94 4.1 20.6 1.0 N A:ASN92 4.1 23.1 1.0 CA A:ILE94 4.2 17.1 1.0 CB A:ILE88 4.2 19.2 1.0 N A:HIS93 4.3 19.3 1.0 HE1 A:HIS95 4.3 26.6 1.0 N A:HIS95 4.5 15.8 1.0 HB2 A:GLU136 4.5 40.0 1.0 CE1 A:HIS95 4.5 22.2 1.0 H A:TYR91 4.5 21.5 1.0 HA A:GLU89 4.6 26.0 1.0 N A:GLU89 4.6 20.0 1.0 CA A:HIS95 4.6 17.0 1.0 HG21 A:ILE88 4.6 33.5 1.0 CB A:ILE94 4.7 17.2 1.0 O A:PHE87 4.7 18.9 1.0 C A:HIS93 4.7 18.6 1.0 CA A:TYR91 4.8 17.6 1.0 H A:HIS93 4.8 23.2 1.0 HG21 A:ILE94 4.9 24.8 1.0 HB2 A:TYR91 4.9 27.5 1.0 N A:TYR91 4.9 17.9 1.0 CG A:GLU136 4.9 51.9 1.0 H A:ASN92 5.0 27.7 1.0 CA A:GLU89 5.0 21.7 1.0

L.Gabison, N.Colloc'h, T.Prange. Azide Inhibition of Urate Oxidase. Acta Crystallogr.,Sect.F V. 70 896 2014.
ISSN: ISSN 1744-3091
PubMed: 25005084
DOI: 10.1107/S2053230X14011753