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Sodium in PDB 4pk0: Crystal Structure of T4 Lysozyme-Peptide in Complex with Teicoplanin- A2-2

Enzymatic activity of Crystal Structure of T4 Lysozyme-Peptide in Complex with Teicoplanin- A2-2

All present enzymatic activity of Crystal Structure of T4 Lysozyme-Peptide in Complex with Teicoplanin- A2-2:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of T4 Lysozyme-Peptide in Complex with Teicoplanin- A2-2, PDB code: 4pk0 was solved by S.Han, B.V.Le, H.Hajare, R.H.G.Baxter, S.J.Miller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.30
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 55.923, 63.233, 138.615, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 23.7

Other elements in 4pk0:

The structure of Crystal Structure of T4 Lysozyme-Peptide in Complex with Teicoplanin- A2-2 also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of T4 Lysozyme-Peptide in Complex with Teicoplanin- A2-2 (pdb code 4pk0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of T4 Lysozyme-Peptide in Complex with Teicoplanin- A2-2, PDB code: 4pk0:

Sodium binding site 1 out of 1 in 4pk0

Go back to Sodium Binding Sites List in 4pk0
Sodium binding site 1 out of 1 in the Crystal Structure of T4 Lysozyme-Peptide in Complex with Teicoplanin- A2-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of T4 Lysozyme-Peptide in Complex with Teicoplanin- A2-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na203

b:45.0
occ:1.00
O A:HOH387 3.3 44.2 1.0
NZ A:LYS16 3.6 32.5 1.0
O4 A:PO4204 3.6 45.1 1.0
CE A:LYS16 4.8 29.8 1.0
O A:HOH331 4.8 43.3 1.0
P A:PO4204 4.8 49.8 1.0
O A:HOH306 4.9 31.9 1.0

Reference:

S.Han, B.V.Le, H.S.Hajare, R.H.Baxter, S.J.Miller. X-Ray Crystal Structure of Teicoplanin A2-2 Bound to A Catalytic Peptide Sequence Via the Carrier Protein Strategy. J.Org.Chem. V. 79 8550 2014.
ISSN: ISSN 0022-3263
PubMed: 25147913
DOI: 10.1021/JO501625F
Page generated: Mon Oct 7 17:44:29 2024

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