Sodium in PDB 4pfi: Crystal Structure of A Trap Periplasmic Solute Binding Protein From Marinobacter Aquaeolei VT8 (MAQU_2829, Target Efi-510133), Apo Open Structure

The structure of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Marinobacter Aquaeolei VT8 (MAQU_2829, Target Efi-510133), Apo Open Structure, PDB code: 4pfi was solved by M.W.Vetting, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, M.Stead, J.D.Attonito, A.Scott Glenn, S.Chowdhury, B.Evans, B.Hillerich, J.Love, R.D.Seidel, K.L.Whalen, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative(Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.34 / 2.30
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	85.841, 85.841, 170.015, 90.00, 90.00, 120.00
R / Rfree (%)	18.6 / 23.2

The binding sites of Sodium atom in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Marinobacter Aquaeolei VT8 (MAQU_2829, Target Efi-510133), Apo Open Structure (pdb code 4pfi). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Marinobacter Aquaeolei VT8 (MAQU_2829, Target Efi-510133), Apo Open Structure, PDB code: 4pfi:

Sodium binding site 1 out of 1 in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Marinobacter Aquaeolei VT8 (MAQU_2829, Target Efi-510133), Apo Open Structure


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Marinobacter Aquaeolei VT8 (MAQU_2829, Target Efi-510133), Apo Open Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:6.7 occ:1.00 OD1 A:ASN244 2.3 8.6 1.0 O A:GLY307 2.4 12.2 1.0 O A:GLN243 2.4 7.9 1.0 O A:HOH508 2.5 7.3 1.0 O A:HOH536 2.6 4.3 0.5 HA A:ASN244 2.8 10.3 1.0 C A:GLY307 3.3 9.4 1.0 HA3 A:GLY307 3.4 11.9 1.0 C A:GLN243 3.4 7.9 1.0 CG A:ASN244 3.5 8.9 1.0 HG13 A:ILE308 3.5 30.9 1.0 CA A:ASN244 3.6 8.6 1.0 CA A:GLY307 3.9 9.9 1.0 N A:ASN244 3.9 8.2 1.0 HA A:ILE308 4.1 11.6 1.0 CB A:ASN244 4.1 9.0 1.0 H A:GLN243 4.2 9.1 1.0 O A:HOH532 4.2 8.2 0.5 HA2 A:GLY307 4.3 11.9 1.0 N A:ILE308 4.3 9.7 1.0 O A:HOH516 4.3 4.5 0.5 O A:HIS240 4.3 8.0 1.0 CG1 A:ILE308 4.5 25.7 1.0 N A:GLN243 4.5 7.6 1.0 ND2 A:ASN244 4.5 9.3 1.0 HB3 A:ASN244 4.6 10.8 1.0 HB A:ILE308 4.6 23.2 1.0 O A:GLY306 4.6 11.5 1.0 CA A:GLN243 4.6 7.7 1.0 CA A:ILE308 4.6 9.6 1.0 HD22 A:ASN244 4.6 11.1 1.0 H A:ASN244 4.7 9.8 1.0 O A:GLU241 4.8 7.7 1.0 HG12 A:ILE308 4.8 30.9 1.0 CB A:ILE308 4.8 19.3 1.0 C A:ASN244 4.8 8.9 1.0 HB2 A:ASN244 4.9 10.8 1.0

M.W.Vetting, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, M.Stead, J.D.Attonito, A.Scott Glenn, S.Chowdhury, B.Evans, B.Hillerich, J.Love, R.D.Seidel, K.L.Whalen, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of A Trap Periplasmic Solute Binding Protein From Marinobacter Aquaeolei VT8 (MAQU_2829, Target Efi-510133), Apo Open Structure To Be Published.