Sodium in PDB 4p7f: Mouse Apo-Comt

All present enzymatic activity of Mouse Apo-Comt:
2.1.1.6;

The structure of Mouse Apo-Comt, PDB code: 4p7f was solved by A.Ehler, J.Benz, D.Schlatter, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.80 / 1.37
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	123.822, 123.822, 88.369, 90.00, 90.00, 120.00
R / Rfree (%)	12.4 / 17.1

The binding sites of Sodium atom in the Mouse Apo-Comt (pdb code 4p7f). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Mouse Apo-Comt, PDB code: 4p7f:

Sodium binding site 1 out of 1 in the Mouse Apo-Comt


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mouse Apo-Comt within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:17.8 occ:1.00 O A:SER229 2.3 19.7 1.0 O A:PHE232 2.4 18.2 1.0 O A:HOH469 2.4 17.3 1.0 O A:VAL226 2.5 17.7 1.0 O A:ARG227 2.5 19.2 1.0 HA A:ARG227 2.8 21.6 1.0 C A:ARG227 3.1 17.7 1.0 C A:SER229 3.4 17.3 1.0 HG A:CYS234 3.4 22.4 1.0 CA A:ARG227 3.4 18.0 1.0 H A:PHE232 3.4 20.3 1.0 HB2 A:PHE232 3.5 20.8 1.0 C A:PHE232 3.5 15.7 1.0 C A:VAL226 3.5 15.9 1.0 H A:SER229 3.8 22.9 1.0 N A:SER229 3.8 19.1 1.0 N A:ARG227 4.0 16.1 1.0 HA A:SER230 4.1 25.0 1.0 N A:GLY228 4.1 18.0 1.0 N A:PHE232 4.1 16.9 1.0 CA A:PHE232 4.1 16.0 1.0 CA A:SER229 4.1 18.0 1.0 CB A:PHE232 4.2 17.3 1.0 HB3 A:SER229 4.2 23.7 1.0 C A:GLY228 4.2 21.2 1.0 SG A:CYS234 4.3 18.6 1.0 N A:SER230 4.4 21.3 1.0 HA A:GLU233 4.4 19.2 1.0 HB3 A:PHE232 4.6 20.8 1.0 CA A:SER230 4.6 20.9 1.0 N A:GLU233 4.6 15.7 1.0 CA A:GLY228 4.7 19.1 1.0 H A:GLY228 4.7 21.6 1.0 CB A:ARG227 4.7 18.8 1.0 CB A:SER229 4.7 19.7 1.0 HB3 A:ARG227 4.8 22.5 1.0 HA A:VAL226 4.8 19.4 1.0 O A:GLY228 4.8 21.8 1.0 H A:ARG227 4.8 19.4 1.0 CA A:VAL226 4.8 16.1 1.0 HA2 A:GLY228 4.9 22.9 1.0 HB2 A:CYS234 4.9 19.4 1.0 C A:SER230 4.9 25.5 1.0 HD2 A:PHE232 4.9 24.6 1.0 HA A:SER229 5.0 21.6 1.0 H A:CYS234 5.0 19.9 1.0 CA A:GLU233 5.0 16.0 1.0

A.Ehler, J.Benz, D.Schlatter, M.G.Rudolph. Mapping the Conformational Space Accessible to Catechol-O-Methyltransferase. Acta Crystallogr.,Sect.D V. 70 2163 2014.
ISSN: ESSN 1399-0047
PubMed: 25084335
DOI: 10.1107/S1399004714012917