Sodium in PDB 4p76: Cellular Response to A Crystal-Forming Protein

The structure of Cellular Response to A Crystal-Forming Protein, PDB code: 4p76 was solved by H.Tsutsui, Y.Jinno, K.Shoda, A.Tomita, M.Matsuda, E.Yamashita, H.Katayama, A.Nakagawa, A.Miyawaki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.35 / 2.90
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	49.862, 84.426, 118.218, 90.00, 90.00, 90.00
R / Rfree (%)	17.4 / 25

The binding sites of Sodium atom in the Cellular Response to A Crystal-Forming Protein (pdb code 4p76). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cellular Response to A Crystal-Forming Protein, PDB code: 4p76:

Sodium binding site 1 out of 1 in the Cellular Response to A Crystal-Forming Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cellular Response to A Crystal-Forming Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Na301 b:19.3 occ:1.00 OH B:TYR214 3.1 24.8 1.0 CD1 B:ILE38 3.6 15.8 1.0 CZ B:TYR214 4.3 22.6 1.0 CG1 B:ILE38 4.5 15.0 1.0 CE1 B:TYR214 4.6 21.5 1.0 CG2 B:ILE38 5.0 14.9 1.0

H.Tsutsui, Y.Jinno, K.Shoda, A.Tomita, M.Matsuda, E.Yamashita, H.Katayama, A.Nakagawa, A.Miyawaki. A Diffraction-Quality Protein Crystal Processed As An Autophagic Cargo Mol.Cell V. 58 186 2015.
ISSN: ISSN 1097-2765
PubMed: 25773597
DOI: 10.1016/J.MOLCEL.2015.02.007