Sodium in PDB 4p30: Structure of Navms Mutant in Presence of PI1 Compound

The structure of Structure of Navms Mutant in Presence of PI1 Compound, PDB code: 4p30 was solved by C.Bagneris, C.E.Naylor, B.A.Wallace, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.73 / 3.31
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	80.260, 334.260, 80.040, 90.00, 90.00, 90.00
R / Rfree (%)	20.4 / 22.5

The binding sites of Sodium atom in the Structure of Navms Mutant in Presence of PI1 Compound (pdb code 4p30). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Structure of Navms Mutant in Presence of PI1 Compound, PDB code: 4p30:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Structure of Navms Mutant in Presence of PI1 Compound


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Navms Mutant in Presence of PI1 Compound within 5.0Å range: probe atom residue distance (Å) B Occ A:Na304 b:50.6 occ:0.50 O A:THR176 4.9 55.1 1.0

Sodium binding site 2 out of 3 in the Structure of Navms Mutant in Presence of PI1 Compound


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of Navms Mutant in Presence of PI1 Compound within 5.0Å range: probe atom residue distance (Å) B Occ C:Na304 b:87.7 occ:0.50 NA D:NA302 4.0 57.8 0.5 O C:THR176 5.0 62.0 1.0

Sodium binding site 3 out of 3 in the Structure of Navms Mutant in Presence of PI1 Compound


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Structure of Navms Mutant in Presence of PI1 Compound within 5.0Å range: probe atom residue distance (Å) B Occ D:Na302 b:57.8 occ:0.50 NA C:NA304 4.0 87.7 0.5 N C:SER179 4.5 57.4 1.0 N D:SER179 4.6 55.8 1.0 CA C:GLU178 4.8 56.9 1.0 CA D:GLU178 4.8 55.7 1.0 CG D:GLU178 5.0 71.0 1.0

C.Bagneris, P.G.Decaen, C.E.Naylor, D.C.Pryde, I.Nobeli, D.E.Clapham, B.A.Wallace. Prokaryotic Navms Channel As A Structural and Functional Model For Eukaryotic Sodium Channel Antagonism. Proc.Natl.Acad.Sci.Usa V. 111 8428 2014.
ISSN: ESSN 1091-6490
PubMed: 24850863
DOI: 10.1073/PNAS.1406855111