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Sodium in PDB 4ooo: X-Ray Structure of the Lysozyme Derivative of Tetrakis(Acetato) Chlorido Diruthenium(II,III) Complex

Enzymatic activity of X-Ray Structure of the Lysozyme Derivative of Tetrakis(Acetato) Chlorido Diruthenium(II,III) Complex

All present enzymatic activity of X-Ray Structure of the Lysozyme Derivative of Tetrakis(Acetato) Chlorido Diruthenium(II,III) Complex:
3.2.1.17;

Protein crystallography data

The structure of X-Ray Structure of the Lysozyme Derivative of Tetrakis(Acetato) Chlorido Diruthenium(II,III) Complex, PDB code: 4ooo was solved by A.Merlino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.36 / 2.15
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.292, 78.292, 37.119, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 25.4

Other elements in 4ooo:

The structure of X-Ray Structure of the Lysozyme Derivative of Tetrakis(Acetato) Chlorido Diruthenium(II,III) Complex also contains other interesting chemical elements:

Ruthenium (Ru) 4 atoms
Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Structure of the Lysozyme Derivative of Tetrakis(Acetato) Chlorido Diruthenium(II,III) Complex (pdb code 4ooo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Structure of the Lysozyme Derivative of Tetrakis(Acetato) Chlorido Diruthenium(II,III) Complex, PDB code: 4ooo:

Sodium binding site 1 out of 1 in 4ooo

Go back to Sodium Binding Sites List in 4ooo
Sodium binding site 1 out of 1 in the X-Ray Structure of the Lysozyme Derivative of Tetrakis(Acetato) Chlorido Diruthenium(II,III) Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of the Lysozyme Derivative of Tetrakis(Acetato) Chlorido Diruthenium(II,III) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na203

b:31.2
occ:1.00
 O A:SER60 2.2 29.5 1.0
O A:CYS64 2.3 27.9 1.0
O A:HOH308 2.4 22.5 1.0
OG A:SER72 2.5 32.1 1.0
O A:ARG73 2.6 34.1 1.0
O A:HOH350 2.6 30.5 1.0
C A:SER60 3.3 29.9 1.0
C A:CYS64 3.4 26.7 1.0
CB A:SER72 3.4 34.3 1.0
C A:ARG73 3.6 33.4 1.0
CA A:SER60 3.9 29.1 1.0
CA A:ASN65 4.0 24.7 1.0
N A:ARG73 4.1 34.0 1.0
N A:ASN65 4.1 25.9 1.0
CB A:SER60 4.1 28.1 1.0
C A:SER72 4.2 34.0 1.0
N A:CYS64 4.4 27.5 1.0
N A:ASN74 4.4 31.9 1.0
C A:ARG61 4.4 34.2 1.0
CA A:ARG73 4.4 34.0 1.0
CA A:ASN74 4.5 30.5 1.0
N A:ARG61 4.5 32.5 1.0
CA A:SER72 4.5 33.9 1.0
O A:ARG61 4.5 35.5 1.0
CA A:CYS64 4.5 27.0 1.0
N A:TRP62 4.6 34.3 1.0
OD1 A:ASN65 4.6 30.1 1.0
O A:SER72 4.6 32.7 1.0
CB A:THR69 4.7 30.0 1.0
N A:ASP66 4.7 23.9 1.0
CA A:ARG61 4.8 34.6 1.0
CB A:ASN74 4.8 30.6 1.0
N A:TRP63 4.8 30.9 1.0
CB A:ASN65 4.9 24.8 1.0
C A:TRP62 4.9 32.5 1.0
CL A:CL202 4.9 33.3 1.0
OG A:SER60 4.9 26.2 1.0
C A:ASN65 4.9 23.9 1.0
OG1 A:THR69 5.0 28.6 1.0

Reference:

L.Messori, T.Marzo, R.N.Sanches, Hanif-Ur-Rehman, D.De Oliveira Silva, A.Merlino. Unusual Structural Features in the Lysozyme Derivative of the Tetrakis(Acetato)Chloridodiruthenium(II,III) Complex. Angew.Chem.Int.Ed.Engl. V. 53 6172 2014.
ISSN: ISSN 1433-7851
PubMed: 24796316
DOI: 10.1002/ANIE.201403337
Page generated: Mon Oct 7 17:30:01 2024

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