Sodium in PDB 4o4x: Crystal Structure of the Vaccine Antigen Transferrin Binding Protein B (Tbpb) Double Mutant Tyr-167-Ala and Trp-176-Ala From Haemophilus Parasuis HP5

The structure of Crystal Structure of the Vaccine Antigen Transferrin Binding Protein B (Tbpb) Double Mutant Tyr-167-Ala and Trp-176-Ala From Haemophilus Parasuis HP5, PDB code: 4o4x was solved by C.Calmettes, R.H.Yu, A.B.Schryvers, T.F.Moraes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.18 / 2.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	239.890, 42.240, 114.020, 90.00, 92.42, 90.00
R / Rfree (%)	21.6 / 23.4

The binding sites of Sodium atom in the Crystal Structure of the Vaccine Antigen Transferrin Binding Protein B (Tbpb) Double Mutant Tyr-167-Ala and Trp-176-Ala From Haemophilus Parasuis HP5 (pdb code 4o4x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Vaccine Antigen Transferrin Binding Protein B (Tbpb) Double Mutant Tyr-167-Ala and Trp-176-Ala From Haemophilus Parasuis HP5, PDB code: 4o4x:

Sodium binding site 1 out of 1 in the Crystal Structure of the Vaccine Antigen Transferrin Binding Protein B (Tbpb) Double Mutant Tyr-167-Ala and Trp-176-Ala From Haemophilus Parasuis HP5


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Vaccine Antigen Transferrin Binding Protein B (Tbpb) Double Mutant Tyr-167-Ala and Trp-176-Ala From Haemophilus Parasuis HP5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na610 b:65.3 occ:1.00 OD1 A:ASN290 2.3 75.2 1.0 O A:ALA291 3.4 72.2 1.0 O A:HOH722 3.5 40.9 1.0 CG A:ASN290 3.5 80.5 1.0 N A:ALA291 3.9 55.1 1.0 CA A:ASN290 4.0 59.6 1.0 C A:ALA291 4.3 71.3 1.0 CB A:ASN290 4.4 64.9 1.0 ND2 A:ASN290 4.4 82.9 1.0 C A:ASN290 4.4 62.8 1.0 O A:HIS289 4.7 43.9 1.0 CA A:ALA291 4.8 59.5 1.0

R.Frandoloso, S.Martinez-Martinez, C.Calmettes, J.Fegan, E.Costa, D.Curran, R.Yu, C.B.Gutierrez-Martin, E.F.Rodriguez Ferri, T.F.Moraes, A.B.Schryvers. Nonbinding Site-Directed Mutants of Transferrin Binding Protein B Enhances Their Immunogenicity and Protective Capabilities. Infect.Immun. 2014.
ISSN: ESSN 1098-5522
PubMed: 25547790
DOI: 10.1128/IAI.02572-14