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Sodium in PDB 4ny1: X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution

Enzymatic activity of X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution

All present enzymatic activity of X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution:
2.4.2.3;

Protein crystallography data

The structure of X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution, PDB code: 4ny1 was solved by V.V.Balaev, A.G.Gabdoulkhakov, A.A.Lashkov, A.M.Mikhailov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.69 / 1.70
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 150.742, 150.742, 46.310, 90.00, 90.00, 120.00
R / Rfree (%) 16.2 / 19.4

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution (pdb code 4ny1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution, PDB code: 4ny1:

Sodium binding site 1 out of 1 in 4ny1

Go back to Sodium Binding Sites List in 4ny1
Sodium binding site 1 out of 1 in the X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:18.3
occ:1.00
 OE1 B:GLU49 2.7 11.1 1.0
OE1 A:GLU49 2.8 9.6 1.0
OG A:SER73 3.0 6.0 1.0
O A:ILE69 3.0 7.2 1.0
O B:ILE69 3.0 5.9 1.0
OG B:SER73 3.1 6.6 1.0
CB A:SER73 3.4 5.4 1.0
CB B:SER73 3.5 6.3 1.0
O B:HOH510 3.6 11.4 0.6
N A:ILE69 3.6 6.5 1.0
N B:ILE69 3.7 5.9 1.0
CD B:GLU49 3.8 11.4 1.0
CD A:GLU49 3.8 9.7 1.0
C A:ILE69 3.9 6.7 1.0
C B:ILE69 4.0 5.7 1.0
CG A:GLU49 4.1 9.2 1.0
CA A:GLY68 4.2 6.0 1.0
C A:GLY68 4.2 6.3 1.0
CG B:GLU49 4.2 11.2 1.0
CA A:ILE69 4.3 6.7 1.0
C B:GLY68 4.3 6.0 1.0
CA B:GLY68 4.3 6.2 1.0
CA B:ILE69 4.3 5.8 1.0
CB A:ILE69 4.7 6.8 1.0
O A:THR67 4.8 5.5 1.0
CA A:SER73 4.8 5.3 1.0
OE2 B:GLU49 4.8 11.8 1.0
CB B:ILE69 4.8 5.9 1.0
CA B:SER73 4.8 6.3 1.0
CB B:GLU49 4.8 11.2 1.0
OE2 A:GLU49 4.9 9.8 1.0
CB A:GLU49 4.9 9.3 1.0
O B:THR67 4.9 6.9 1.0
N A:SER73 5.0 5.3 1.0

Reference:

V.V.Balaev, A.G.Gabdoulkhakov, A.A.Lashkov, A.M.Mikhailov. X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution To Be Published.
Page generated: Mon Oct 7 17:19:59 2024

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