Sodium in PDB 4nt1: Crystal Structure of Apo-Form of Arabidopsis ACD11 (Accelerated-Cell- Death 11) at 1.8 Angstrom Resolution

The structure of Crystal Structure of Apo-Form of Arabidopsis ACD11 (Accelerated-Cell- Death 11) at 1.8 Angstrom Resolution, PDB code: 4nt1 was solved by D.K.Simanshu, R.E.Brown, D.J.Patel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.82 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	70.756, 77.014, 154.716, 90.00, 90.00, 90.00
R / Rfree (%)	17.4 / 21.3

The binding sites of Sodium atom in the Crystal Structure of Apo-Form of Arabidopsis ACD11 (Accelerated-Cell- Death 11) at 1.8 Angstrom Resolution (pdb code 4nt1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Apo-Form of Arabidopsis ACD11 (Accelerated-Cell- Death 11) at 1.8 Angstrom Resolution, PDB code: 4nt1:

Sodium binding site 1 out of 1 in the Crystal Structure of Apo-Form of Arabidopsis ACD11 (Accelerated-Cell- Death 11) at 1.8 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Apo-Form of Arabidopsis ACD11 (Accelerated-Cell- Death 11) at 1.8 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:54.1 occ:1.00 O A:HOH401 2.3 25.7 1.0 O A:SER72 2.5 24.2 1.0 OG1 A:THR34 2.6 21.3 1.0 O A:HOH508 2.8 47.2 1.0 O A:ILE75 2.8 22.0 1.0 C A:SER72 3.6 23.0 1.0 O A:HOH568 3.7 37.0 1.0 CB A:THR34 3.8 25.9 1.0 C A:ILE75 3.9 24.9 1.0 N A:THR34 4.2 15.6 1.0 N A:ILE75 4.3 20.5 1.0 CA A:SER73 4.4 24.5 1.0 C A:SER73 4.4 29.1 1.0 N A:SER73 4.5 21.4 1.0 O A:SER73 4.6 26.6 1.0 CA A:THR34 4.6 19.9 1.0 CA A:SER72 4.6 24.0 1.0 O A:HOH565 4.6 47.6 1.0 CB A:SER72 4.6 20.9 1.0 CA A:SER76 4.7 21.8 1.0 CA A:ILE75 4.7 23.4 1.0 O A:HOH578 4.7 36.1 1.0 N A:SER76 4.7 25.1 1.0 O A:SER76 4.7 21.6 1.0 N A:SER74 4.8 20.7 1.0 CG2 A:THR34 4.9 28.0 1.0

D.K.Simanshu, X.Zhai, D.Munch, D.Hofius, J.E.Markham, J.Bielawski, A.Bielawska, L.Malinina, J.G.Molotkovsky, J.W.Mundy, D.J.Patel, R.E.Brown. Arabidopsis Accelerated Cell Death 11, ACD11, Is A Ceramide-1-Phosphate Transfer Protein and Intermediary Regulator of Phytoceramide Levels. Cell Rep V. 6 388 2014.
ISSN: ESSN 2211-1247
PubMed: 24412362
DOI: 10.1016/J.CELREP.2013.12.023