Sodium in PDB 4nrh: Copn-SCC3 Complex

The structure of Copn-SCC3 Complex, PDB code: 4nrh was solved by T.L.Archuleta, B.W.Spiller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.20 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	61.571, 96.183, 94.472, 90.00, 92.27, 90.00
R / Rfree (%)	18.4 / 22.7

The binding sites of Sodium atom in the Copn-SCC3 Complex (pdb code 4nrh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Copn-SCC3 Complex, PDB code: 4nrh:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Copn-SCC3 Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Copn-SCC3 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:42.0 occ:1.00 O A:HOH509 2.3 46.0 1.0 O A:ASN104 2.4 39.0 1.0 O A:ALA101 2.5 35.9 1.0 O A:ILE107 2.5 38.0 1.0 O A:HOH502 2.6 35.8 1.0 O A:HOH518 2.8 52.5 1.0 C A:ASN104 3.5 38.1 1.0 C A:ALA101 3.6 35.5 1.0 C A:ILE107 3.7 41.0 1.0 CB A:ALA101 4.0 25.0 1.0 CA A:ALA101 4.1 30.1 1.0 CA A:SER108 4.2 31.9 1.0 CA A:SER105 4.3 32.0 1.0 N A:SER105 4.3 25.9 1.0 N A:ASN104 4.3 41.8 1.0 N A:SER108 4.4 33.0 1.0 CA A:ASN104 4.4 37.5 1.0 N A:ILE107 4.6 36.8 1.0 O A:HOH561 4.6 52.0 1.0 N A:SER102 4.6 34.9 1.0 O A:SER102 4.6 47.1 1.0 C A:SER105 4.7 37.5 1.0 CA A:ILE107 4.8 44.2 1.0 C A:SER102 4.8 41.9 1.0 CB A:ASN104 4.8 38.0 1.0 CB A:SER108 4.9 38.8 1.0 CA A:SER102 4.9 39.4 1.0

Sodium binding site 2 out of 2 in the Copn-SCC3 Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Copn-SCC3 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Na401 b:59.1 occ:1.00 O C:HOH515 2.3 43.8 1.0 O C:ASN104 2.3 51.5 1.0 O C:HOH521 2.3 57.3 1.0 O C:ILE107 2.4 45.0 1.0 O C:ALA101 2.5 48.6 1.0 C C:ASN104 3.4 48.6 1.0 C C:ALA101 3.6 49.2 1.0 C C:ILE107 3.6 48.8 1.0 CB C:ALA101 3.9 47.5 1.0 CA C:ALA101 4.1 49.4 1.0 CA C:SER105 4.2 46.8 1.0 N C:SER105 4.2 42.7 1.0 CA C:SER108 4.2 43.9 1.0 N C:SER108 4.3 44.3 1.0 N C:ASN104 4.3 49.7 1.0 CA C:ASN104 4.4 42.3 1.0 N C:ILE107 4.4 48.1 1.0 C C:SER105 4.6 48.1 1.0 CA C:ILE107 4.6 47.6 1.0 N C:SER102 4.7 47.7 1.0 O C:SER102 4.7 55.5 1.0 CB C:ASN104 4.8 34.0 1.0 C C:SER102 4.9 53.4 1.0 CB C:SER108 4.9 49.6 1.0 N C:GLU106 4.9 43.6 1.0

T.L.Archuleta, B.W.Spiller. A Gatekeeper-Chaperone Scaffold Determines the Translocator-Effector Secretion Hierarchy in Type Three Secretion To Be Published.