Sodium in PDB 4nbs: The Structure of AIF2GAMMA Subunit H20F From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp

The structure of The Structure of AIF2GAMMA Subunit H20F From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp, PDB code: 4nbs was solved by O.V.Kravchenko, O.S.Nikonov, V.I.Arhipova, E.A.Stolboushkina, A.G.Gabdulkhakov, A.D.Nikulin, M.B.Garber, S.V.Nikonov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.79 / 2.31
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	187.152, 187.152, 187.152, 90.00, 90.00, 90.00
R / Rfree (%)	17.7 / 20.1

The structure of The Structure of AIF2GAMMA Subunit H20F From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Sodium atom in the The Structure of AIF2GAMMA Subunit H20F From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp (pdb code 4nbs). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Structure of AIF2GAMMA Subunit H20F From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp, PDB code: 4nbs:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the The Structure of AIF2GAMMA Subunit H20F From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Structure of AIF2GAMMA Subunit H20F From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp within 5.0Å range: probe atom residue distance (Å) B Occ A:Na518 b:34.6 occ:1.00 OD1 A:ASN328 2.3 31.1 1.0 O A:HOH616 2.4 38.8 1.0 O A:HOH605 2.4 35.8 1.0 CG A:ASN328 3.4 32.9 1.0 CB A:TRP327 3.6 30.4 1.0 ND2 A:ASN328 3.8 31.7 1.0 O A:HOH667 4.0 45.4 1.0 C A:TRP327 4.4 33.9 1.0 O A:TRP327 4.4 35.0 1.0 CG A:TRP327 4.5 36.4 1.0 CA A:TRP327 4.6 31.7 1.0 CB A:ASN328 4.7 27.9 1.0 N A:ASN328 4.7 32.9 1.0

Sodium binding site 2 out of 2 in the The Structure of AIF2GAMMA Subunit H20F From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Structure of AIF2GAMMA Subunit H20F From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp within 5.0Å range: probe atom residue distance (Å) B Occ A:Na519 b:48.1 occ:1.00 O A:HOH848 2.4 57.6 1.0 OG1 A:THR54 2.5 35.5 1.0 O A:HOH712 2.5 42.8 1.0 O A:HOH653 2.7 43.6 1.0 O A:HOH641 2.8 38.1 1.0 O A:THR70 2.9 48.9 1.0 CB A:THR54 3.4 36.2 1.0 CB A:THR70 3.6 37.2 1.0 OG1 A:THR70 3.7 42.2 1.0 O A:THR30 3.9 40.6 1.0 C A:THR70 3.9 43.3 1.0 CA A:THR54 4.0 35.9 1.0 CA A:THR70 4.3 41.0 1.0 N A:ASN55 4.4 39.3 1.0 O A:ASN55 4.4 39.5 1.0 C A:THR30 4.5 37.9 1.0 CA A:THR30 4.5 36.5 1.0 O A:ILE29 4.6 38.1 1.0 CG2 A:THR54 4.7 32.1 1.0 CG2 A:THR70 4.7 35.0 1.0 C A:THR54 4.7 38.8 1.0 O A:GLU53 4.8 33.5 1.0

O.V.Kravchenko, O.S.Nikonov, V.I.Arhipova, E.A.Stolboushkina, A.G.Gabdulkhakov, A.D.Nikulin, M.B.Garber, S.V.Nikonov. The Structure of AIF2GAMMA Subunit H20F From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp To Be Published.