Sodium in PDB 4mfz: The Crystal Structure of Acyltransferase in Complex with Decanoyl-Coa

The structure of The Crystal Structure of Acyltransferase in Complex with Decanoyl-Coa, PDB code: 4mfz was solved by S.Y.Lyu, Y.C.Liu, C.Y.Chang, C.J.Huang, T.L.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	53.599, 68.442, 94.980, 90.00, 90.00, 90.00
R / Rfree (%)	18.9 / 25.7

The binding sites of Sodium atom in the The Crystal Structure of Acyltransferase in Complex with Decanoyl-Coa (pdb code 4mfz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of Acyltransferase in Complex with Decanoyl-Coa, PDB code: 4mfz:

Sodium binding site 1 out of 1 in the The Crystal Structure of Acyltransferase in Complex with Decanoyl-Coa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Acyltransferase in Complex with Decanoyl-Coa within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:26.3 occ:1.00 O A:HOH746 2.2 39.8 1.0 NE2 A:HIS85 2.2 35.2 1.0 O A:HOH762 2.3 41.0 1.0 O A:HOH747 2.3 34.0 1.0 O A:HOH748 2.6 41.5 1.0 CD2 A:HIS85 3.2 31.4 1.0 CE1 A:HIS85 3.2 32.4 1.0 O A:HOH568 3.9 43.0 1.0 O A:HOH507 4.3 37.4 1.0 ND1 A:HIS85 4.3 32.3 1.0 CG A:HIS85 4.4 30.5 1.0 CG A:ARG84 4.8 31.8 1.0

S.Y.Lyu, Y.C.Liu, C.Y.Chang, C.J.Huang, Y.H.Chiu, C.M.Huang, N.S.Hsu, K.H.Lin, C.J.Wu, M.D.Tsai, T.L.Li. Multiple Complexes of Long Aliphatic N-Acyltransferases Lead to Synthesis of 2,6-Diacylated/2-Acyl-Substituted Glycopeptide Antibiotics, Effectively Killing Vancomycin-Resistant Enterococcus J.Am.Chem.Soc. V. 136 10989 2014.
ISSN: ISSN 0002-7863
PubMed: 25095906
DOI: 10.1021/JA504125V