Sodium in PDB 4lgd: Structural Basis For Autoactivation of Human MST2 Kinase and Its Regulation By RASSF5

All present enzymatic activity of Structural Basis For Autoactivation of Human MST2 Kinase and Its Regulation By RASSF5:
2.7.11.1;

The structure of Structural Basis For Autoactivation of Human MST2 Kinase and Its Regulation By RASSF5, PDB code: 4lgd was solved by X.Luo, L.Ni, D.R.Tomchick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 3.05
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	123.403, 237.136, 95.862, 90.00, 100.70, 90.00
R / Rfree (%)	19.9 / 24.4

The structure of Structural Basis For Autoactivation of Human MST2 Kinase and Its Regulation By RASSF5 also contains other interesting chemical elements:

Magnesium

(Mg)

4 atoms

The binding sites of Sodium atom in the Structural Basis For Autoactivation of Human MST2 Kinase and Its Regulation By RASSF5 (pdb code 4lgd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Structural Basis For Autoactivation of Human MST2 Kinase and Its Regulation By RASSF5, PDB code: 4lgd:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Structural Basis For Autoactivation of Human MST2 Kinase and Its Regulation By RASSF5


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structural Basis For Autoactivation of Human MST2 Kinase and Its Regulation By RASSF5 within 5.0Å range: probe atom residue distance (Å) B Occ C:Na504 b:0.9 occ:1.00 OD2 C:ASP121 2.5 0.5 1.0 HA C:ASP121 3.6 0.3 1.0 HE1 C:PHE277 3.7 0.7 1.0 CG C:ASP121 3.7 0.3 1.0 HD1 C:PHE277 3.7 0.9 1.0 O C:ASN280 3.8 0.1 1.0 HB2 C:ALA124 3.9 0.7 1.0 HB3 C:ALA124 4.1 0.7 1.0 CE1 C:PHE277 4.1 0.1 1.0 HA C:ALA281 4.1 0.9 1.0 CD1 C:PHE277 4.1 0.6 1.0 O C:PHE277 4.3 0.4 1.0 CB C:ALA124 4.3 0.6 1.0 HA C:PHE277 4.3 0.5 1.0 HB1 C:ALA124 4.4 0.7 1.0 CA C:ASP121 4.4 0.9 1.0 OD1 C:ASP121 4.5 0.9 1.0 HE3 C:LYS282 4.5 0.3 1.0 HB3 C:GLU120 4.6 0.3 1.0 C C:ASN280 4.6 0.0 1.0 CB C:ASP121 4.7 0.6 1.0 HB2 C:ASN280 4.7 0.7 1.0 N C:ASP121 4.7 0.1 1.0 HB3 C:ASN280 4.8 0.7 1.0 H C:ASP121 5.0 0.8 1.0 HG2 C:LYS282 5.0 0.1 1.0

Sodium binding site 2 out of 3 in the Structural Basis For Autoactivation of Human MST2 Kinase and Its Regulation By RASSF5


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structural Basis For Autoactivation of Human MST2 Kinase and Its Regulation By RASSF5 within 5.0Å range: probe atom residue distance (Å) B Occ C:Na505 b:0.1 occ:1.00 N C:PHE90 2.1 0.0 1.0 OD1 H:ASN379 2.5 0.7 1.0 HA C:TYR89 2.6 0.2 1.0 HB3 C:PHE90 2.8 0.3 1.0 HB3 C:TYR89 2.9 0.8 1.0 HD22 H:ASN379 3.0 0.5 1.0 C C:TYR89 3.0 0.4 1.0 CA C:PHE90 3.0 0.6 1.0 CG H:ASN379 3.1 0.3 1.0 CA C:TYR89 3.2 0.5 1.0 CB C:PHE90 3.2 0.1 1.0 O C:PHE90 3.3 0.1 1.0 ND2 H:ASN379 3.3 0.5 1.0 HB2 C:PHE90 3.3 0.3 1.0 CB C:TYR89 3.5 0.8 1.0 HD1 C:TYR89 3.6 0.2 1.0 C C:PHE90 3.6 0.0 1.0 HA C:PHE90 3.9 0.3 1.0 HD21 H:ASN379 4.0 0.5 1.0 HB3 H:ASN379 4.2 0.9 1.0 O C:TYR89 4.2 0.3 1.0 CB H:ASN379 4.3 0.1 1.0 HB2 C:TYR89 4.3 0.8 1.0 CD1 C:TYR89 4.3 0.0 1.0 CG C:TYR89 4.4 0.0 1.0 N C:TYR89 4.5 0.6 1.0 CG C:PHE90 4.6 0.2 1.0 HA H:ASN379 4.7 0.4 1.0 HD3 C:PRO23 4.8 0.9 1.0 N C:LYS91 4.9 0.7 1.0 HB2 H:ASN379 4.9 0.9 1.0 O C:SER88 4.9 0.6 1.0

Sodium binding site 3 out of 3 in the Structural Basis For Autoactivation of Human MST2 Kinase and Its Regulation By RASSF5


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Structural Basis For Autoactivation of Human MST2 Kinase and Its Regulation By RASSF5 within 5.0Å range: probe atom residue distance (Å) B Occ D:Na506 b:65.3 occ:1.00 OD1 D:ASP121 2.5 0.8 1.0 HA D:ASP121 3.5 0.9 1.0 HB2 D:ALA124 3.7 89.8 1.0 HB3 D:ALA124 3.7 89.8 1.0 CG D:ASP121 3.8 0.5 1.0 HA D:ALA281 3.9 91.6 1.0 HD1 D:PHE277 3.9 0.4 1.0 HE1 D:PHE277 4.0 0.7 1.0 O D:ASN280 4.0 94.0 1.0 CB D:ALA124 4.1 74.8 1.0 O D:PHE277 4.1 0.7 1.0 HB1 D:ALA124 4.1 89.8 1.0 CD1 D:PHE277 4.3 92.0 1.0 HA D:PHE277 4.3 0.0 1.0 CE1 D:PHE277 4.3 91.4 1.0 CA D:ASP121 4.3 0.2 1.0 HB2 D:ASN280 4.3 0.4 1.0 C D:ASN280 4.5 1.0 1.0 HB3 D:ASN280 4.6 0.4 1.0 OD2 D:ASP121 4.6 0.7 1.0 HE3 D:LYS282 4.6 0.5 1.0 CB D:ASP121 4.6 0.1 1.0 HB3 D:GLU120 4.7 0.0 1.0 N D:ASP121 4.7 0.5 1.0 CA D:ALA281 4.7 76.3 1.0 N D:ALA281 4.8 0.3 1.0 CB D:ASN280 4.9 96.2 1.0 HG2 D:LYS282 4.9 99.7 1.0 C D:PHE277 5.0 0.0 1.0

L.Ni, S.Li, J.Yu, J.Min, C.A.Brautigam, D.R.Tomchick, D.Pan, X.Luo. Structural Basis For Autoactivation of Human MST2 Kinase and Its Regulation By RASSF5. Structure V. 21 1757 2013.
ISSN: ISSN 0969-2126
PubMed: 23972470
DOI: 10.1016/J.STR.2013.07.008