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Sodium in PDB 4kt7: The Crystal Structure of 4-Diphosphocytidyl-2C-Methyl-D- Erythritolsynthase From Anaerococcus Prevotii Dsm 20548

Enzymatic activity of The Crystal Structure of 4-Diphosphocytidyl-2C-Methyl-D- Erythritolsynthase From Anaerococcus Prevotii Dsm 20548

All present enzymatic activity of The Crystal Structure of 4-Diphosphocytidyl-2C-Methyl-D- Erythritolsynthase From Anaerococcus Prevotii Dsm 20548:
2.7.7.60;

Protein crystallography data

The structure of The Crystal Structure of 4-Diphosphocytidyl-2C-Methyl-D- Erythritolsynthase From Anaerococcus Prevotii Dsm 20548, PDB code: 4kt7 was solved by D.Borek, K.Tan, L.Stols, W.H.Eschenfeidt, Z.Otwinoski, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.61 / 2.00
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 87.858, 145.509, 36.719, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 22.8

Other elements in 4kt7:

The structure of The Crystal Structure of 4-Diphosphocytidyl-2C-Methyl-D- Erythritolsynthase From Anaerococcus Prevotii Dsm 20548 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the The Crystal Structure of 4-Diphosphocytidyl-2C-Methyl-D- Erythritolsynthase From Anaerococcus Prevotii Dsm 20548 (pdb code 4kt7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of 4-Diphosphocytidyl-2C-Methyl-D- Erythritolsynthase From Anaerococcus Prevotii Dsm 20548, PDB code: 4kt7:

Sodium binding site 1 out of 1 in 4kt7

Go back to Sodium Binding Sites List in 4kt7
Sodium binding site 1 out of 1 in the The Crystal Structure of 4-Diphosphocytidyl-2C-Methyl-D- Erythritolsynthase From Anaerococcus Prevotii Dsm 20548


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of 4-Diphosphocytidyl-2C-Methyl-D- Erythritolsynthase From Anaerococcus Prevotii Dsm 20548 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na301

b:13.1
occ:0.50
 O B:HOH466 2.3 27.2 1.0
OD1 B:ASP151 2.3 39.7 1.0
O B:HOH465 2.3 52.0 0.5
O B:HOH451 2.4 24.3 1.0
CG B:ASP151 3.6 36.1 1.0
NZ A:LYS202 4.0 48.3 1.0
CA B:ASP151 4.1 25.1 1.0
OD2 B:ASP145 4.4 28.8 1.0
OD2 B:ASP151 4.4 34.0 1.0
CB B:ASP151 4.4 28.9 1.0
CE A:LYS202 4.6 47.3 1.0
O B:ASP151 4.7 19.9 1.0
O B:VAL150 4.7 17.4 1.0
C B:ASP151 4.9 21.8 1.0

Reference:

D.Borek, K.Tan, L.Stols, W.H.Eschenfeidt, Z.Otwinoski, A.Joachimiak. The Crystal Structure of 4-Diphosphocytidyl-2C-Methyl-D-Erythritolsynthase From Anaerococcus Prevotii Dsm 20548 To Be Published.
Page generated: Mon Oct 7 16:35:51 2024

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