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Sodium in PDB 4k7x: Crystal Structure of A 4-Hydroxyproline Epimerase From Burkholderia Multivorans, Target Efi-506479, with Bound Phosphate, Closed Domains

Enzymatic activity of Crystal Structure of A 4-Hydroxyproline Epimerase From Burkholderia Multivorans, Target Efi-506479, with Bound Phosphate, Closed Domains

All present enzymatic activity of Crystal Structure of A 4-Hydroxyproline Epimerase From Burkholderia Multivorans, Target Efi-506479, with Bound Phosphate, Closed Domains:
5.1.1.4;

Protein crystallography data

The structure of Crystal Structure of A 4-Hydroxyproline Epimerase From Burkholderia Multivorans, Target Efi-506479, with Bound Phosphate, Closed Domains, PDB code: 4k7x was solved by M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Sojitra, M.Stead, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.78 / 1.75
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 114.885, 114.885, 173.699, 90.00, 90.00, 90.00
R / Rfree (%) 13.7 / 15.6

Other elements in 4k7x:

The structure of Crystal Structure of A 4-Hydroxyproline Epimerase From Burkholderia Multivorans, Target Efi-506479, with Bound Phosphate, Closed Domains also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A 4-Hydroxyproline Epimerase From Burkholderia Multivorans, Target Efi-506479, with Bound Phosphate, Closed Domains (pdb code 4k7x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A 4-Hydroxyproline Epimerase From Burkholderia Multivorans, Target Efi-506479, with Bound Phosphate, Closed Domains, PDB code: 4k7x:

Sodium binding site 1 out of 1 in 4k7x

Go back to Sodium Binding Sites List in 4k7x
Sodium binding site 1 out of 1 in the Crystal Structure of A 4-Hydroxyproline Epimerase From Burkholderia Multivorans, Target Efi-506479, with Bound Phosphate, Closed Domains


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A 4-Hydroxyproline Epimerase From Burkholderia Multivorans, Target Efi-506479, with Bound Phosphate, Closed Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na408

b:16.8
occ:1.00
 O A:HIS219 2.3 15.4 1.0
O A:ASP216 2.3 17.9 1.0
O A:HOH650 2.3 23.0 1.0
O A:HOH662 2.4 25.7 1.0
O A:HOH678 2.4 25.7 1.0
O A:HOH555 2.6 17.1 1.0
C A:ASP216 3.4 16.4 1.0
H A:ASP216 3.5 20.4 1.0
C A:HIS219 3.5 12.3 1.0
HA A:PRO217 3.6 17.5 1.0
H A:HIS219 3.6 14.8 1.0
HA A:ASP220 3.7 13.7 1.0
O A:HOH914 3.8 54.3 1.0
O A:HOH713 4.1 34.0 1.0
O A:HOH851 4.1 38.2 1.0
CA A:PRO217 4.1 14.6 1.0
O A:HOH687 4.1 40.2 1.0
C A:PRO217 4.1 14.4 1.0
N A:HIS219 4.1 12.3 1.0
O A:HOH891 4.2 45.9 1.0
N A:PRO217 4.2 16.4 1.0
O A:PRO217 4.2 15.1 1.0
N A:ASP216 4.2 17.0 1.0
HB3 A:ASP216 4.3 18.7 1.0
CA A:ASP220 4.3 11.4 1.0
O A:ASP220 4.4 11.5 1.0
N A:ASP220 4.4 11.3 1.0
CA A:ASP216 4.4 15.3 1.0
C A:ASP220 4.5 12.2 1.0
CA A:HIS219 4.5 12.7 1.0
N A:GLU218 4.6 14.8 1.0
O A:HOH708 4.9 32.4 1.0
H A:GLU218 4.9 17.8 1.0
CB A:ASP216 4.9 15.6 1.0
C A:GLU218 4.9 14.7 1.0
HA A:HIS219 5.0 15.2 1.0

Reference:

M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Sojitra, M.Stead, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of A 4-Hydroxyproline Epimerase From Burkholderia Multivorans, Target Efi-506479, with Bound Phosphate, Closed Domains To Be Published.
Page generated: Mon Oct 7 16:26:07 2024

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