Atomistry » Sodium » PDB 4jes-4jtk » 4jtg
Atomistry »
  Sodium »
    PDB 4jes-4jtk »
      4jtg »

Sodium in PDB 4jtg: Crystal Structure of F114R/R117A Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis

Enzymatic activity of Crystal Structure of F114R/R117A Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis

All present enzymatic activity of Crystal Structure of F114R/R117A Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis:
2.5.1.55;

Protein crystallography data

The structure of Crystal Structure of F114R/R117A Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis, PDB code: 4jtg was solved by T.M.Allison, F.C.Cochrane, G.B.Jameson, E.J.Parker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.58 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 81.590, 85.370, 163.350, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 19.1

Other elements in 4jtg:

The structure of Crystal Structure of F114R/R117A Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of F114R/R117A Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis (pdb code 4jtg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of F114R/R117A Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis, PDB code: 4jtg:

Sodium binding site 1 out of 1 in 4jtg

Go back to Sodium Binding Sites List in 4jtg
Sodium binding site 1 out of 1 in the Crystal Structure of F114R/R117A Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of F114R/R117A Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na302

b:19.4
occ:1.00
 O C:ALA103 2.2 14.8 1.0
O C:HOH402 2.3 30.4 1.0
O C:HOH489 2.4 20.6 1.0
OD1 C:ASN130 2.4 18.0 1.0
O C:CYS106 2.5 17.5 1.0
C C:CYS106 3.4 15.1 1.0
C C:ALA103 3.4 14.5 1.0
CG C:ASN130 3.5 17.1 1.0
ND2 C:ASN130 3.9 18.2 1.0
CA C:ASP107 4.0 14.6 1.0
N C:CYS106 4.1 14.8 1.0
N C:ASP107 4.1 14.2 1.0
CA C:ALA103 4.1 14.3 1.0
O C:HOH517 4.2 49.7 1.0
C C:GLU104 4.3 16.0 0.5
CA C:CYS106 4.4 14.7 1.0
O C:HOH446 4.4 19.8 1.0
C C:VAL105 4.4 15.3 1.0
N C:GLU104 4.4 15.2 0.5
N C:GLU104 4.4 15.8 0.5
CA C:GLU104 4.4 15.4 0.5
C C:GLU104 4.5 15.6 0.5
O C:GLU104 4.5 15.3 0.5
N C:VAL105 4.5 15.0 1.0
O C:ASP107 4.6 16.3 1.0
CA C:GLU104 4.6 16.3 0.5
C C:ASP107 4.6 14.7 1.0
CB C:ALA103 4.7 14.8 1.0
O C:VAL105 4.7 17.1 1.0
O C:HOH441 4.8 24.5 1.0
CB C:ASN130 4.8 15.5 1.0
O C:GLU104 4.9 15.4 0.5

Reference:

T.M.Allison, F.C.Cochrane, G.B.Jameson, E.J.Parker. Examining the Role of Intersubunit Contacts in Catalysis By 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase. Biochemistry V. 52 4676 2013.
ISSN: ISSN 0006-2960
PubMed: 23746359
DOI: 10.1021/BI400521F
Page generated: Mon Oct 7 16:22:29 2024

Last articles

Mg in 4QZ2
Mg in 4QZ0
Mg in 4QZ1
Mg in 4QYI
Mg in 4QYT
Mg in 4QYM
Mg in 4QY6
Mg in 4QXJ
Mg in 4QY5
Mg in 4QWX
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy