Sodium in PDB 4jga: X-Ray Crystal Structure of 3-Oxoacyl-[Acyl-Carrier-Protein] Synthase 2 From Rickettsia Rickettsii

Enzymatic activity of X-Ray Crystal Structure of 3-Oxoacyl-[Acyl-Carrier-Protein] Synthase 2 From Rickettsia Rickettsii

All present enzymatic activity of X-Ray Crystal Structure of 3-Oxoacyl-[Acyl-Carrier-Protein] Synthase 2 From Rickettsia Rickettsii:
2.3.1.179;

Protein crystallography data

The structure of X-Ray Crystal Structure of 3-Oxoacyl-[Acyl-Carrier-Protein] Synthase 2 From Rickettsia Rickettsii, PDB code: 4jga was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	19.19 / 2.10
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	73.170, 62.740, 95.430, 90.00, 112.08, 90.00
*R / R_free (%)*	14.8 / 17.8

Other elements in 4jga:

The structure of X-Ray Crystal Structure of 3-Oxoacyl-[Acyl-Carrier-Protein] Synthase 2 From Rickettsia Rickettsii also contains other interesting chemical elements:

Potassium

(K)

2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Crystal Structure of 3-Oxoacyl-[Acyl-Carrier-Protein] Synthase 2 From Rickettsia Rickettsii (pdb code 4jga). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Crystal Structure of 3-Oxoacyl-[Acyl-Carrier-Protein] Synthase 2 From Rickettsia Rickettsii, PDB code: 4jga:

Sodium binding site 1 out of 1 in 4jga

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Sodium Binding Sites List in 4jga

Sodium binding site 1 out of 1 in the X-Ray Crystal Structure of 3-Oxoacyl-[Acyl-Carrier-Protein] Synthase 2 From Rickettsia Rickettsii

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Crystal Structure of 3-Oxoacyl-[Acyl-Carrier-Protein] Synthase 2 From Rickettsia Rickettsii within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na503 b:8.3 occ:1.00	OD1	A:ASP313	2.6	16.2	1.0
	O	A:HOH705	2.6	21.6	1.0
	O	A:ASP310	2.8	18.6	1.0
	O	A:HOH814	2.9	35.3	1.0
	O	A:ILE312	3.1	15.5	1.0
	O	A:MET311	3.6	16.3	1.0
	O	A:HOH841	3.6	29.7	1.0
	CG	A:ASP313	3.7	15.7	1.0
	C	A:MET311	3.7	16.3	1.0
	C	A:ILE312	3.8	14.9	1.0
	C	A:ASP310	3.9	18.2	1.0
	CA	A:MET311	4.1	17.4	1.0
	ND2	A:ASN341	4.1	22.6	1.0
	CA	A:ASP313	4.2	14.7	1.0
	NZ	A:LYS403	4.2	24.5	1.0
	N	A:ASP313	4.2	14.4	1.0
	N	A:ILE312	4.3	15.4	1.0
	OD1	A:ASN341	4.3	23.2	1.0
	OD2	A:ASP313	4.5	15.8	1.0
	N	A:MET311	4.5	17.5	1.0
	CB	A:ASP313	4.5	15.0	1.0
	CG	A:ASN341	4.6	22.7	1.0
	CA	A:ILE312	4.7	14.6	1.0
	CE	A:LYS403	4.8	24.2	1.0
	O	A:HOH777	4.8	19.6	1.0

Reference:

J.W.Fairman, J.A.Abendroth, T.E.Edwards, D.Lorimer. X-Ray Crystal Structure of 3-Oxoacyl-[Acyl-Carrier-Protein] Synthase 2 From Rickettsia Rickettsii To Be Published.

Page generated: Mon Oct 7 16:18:46 2024

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