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Sodium in PDB 4jcm: Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution

Enzymatic activity of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution

All present enzymatic activity of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution:
2.4.1.19;

Protein crystallography data

The structure of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution, PDB code: 4jcm was solved by L.Wu, D.Yang, J.Zhou, J.Wu, J.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.65 / 1.65
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 205.736, 205.736, 43.504, 90.00, 90.00, 120.00
R / Rfree (%) 12.7 / 13.4

Other elements in 4jcm:

The structure of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution also contains other interesting chemical elements:

Chlorine (Cl) 13 atoms
Calcium (Ca) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution (pdb code 4jcm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution, PDB code: 4jcm:

Sodium binding site 1 out of 1 in 4jcm

Go back to Sodium Binding Sites List in 4jcm
Sodium binding site 1 out of 1 in the Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na720

b:25.4
occ:1.00
 O A:HOH849 2.8 22.4 1.0
O A:HOH839 2.8 21.8 1.0
O A:HOH1103 3.0 44.1 1.0
N A:SER628 3.0 12.8 1.0
CA A:GLY228 3.5 15.4 1.0
CG1 A:VAL627 3.7 19.1 1.0
CB A:SER628 3.7 14.7 1.0
CA A:VAL627 3.8 14.5 1.0
C A:VAL627 3.9 13.1 1.0
CA A:SER628 3.9 14.1 1.0
O A:SER628 4.1 17.6 1.0
CD A:LYS231 4.2 21.1 1.0
N A:GLY228 4.2 16.6 1.0
CB A:VAL627 4.3 15.3 1.0
O A:HOH1045 4.4 28.7 1.0
CD1 A:ILE609 4.4 29.5 1.0
C A:SER628 4.5 17.1 1.0
O A:HOH1062 4.5 45.3 1.0
O A:ASP626 4.6 18.9 1.0
C A:GLY228 4.6 15.3 1.0
NZ A:LYS231 4.7 40.0 1.0
O A:GLY228 4.7 17.1 1.0
CB A:LYS231 4.9 15.8 1.0
O A:HOH915 4.9 51.3 1.0
CE A:LYS231 4.9 33.0 1.0
C A:LEU227 4.9 22.2 1.0
N A:VAL627 5.0 16.5 1.0

Reference:

L.Wu, D.Yang, J.Li, J.Zhou, J.Wu. The Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution. To Be Published.
Page generated: Sun Aug 17 20:00:54 2025

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