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Sodium in PDB 4jci: Crystal Structure of CSAL_2705, A Putative Hydroxyproline Epimerase From Chromohalobacter Salexigens (Target Efi-506486), Space Group P212121, Unliganded

Protein crystallography data

The structure of Crystal Structure of CSAL_2705, A Putative Hydroxyproline Epimerase From Chromohalobacter Salexigens (Target Efi-506486), Space Group P212121, Unliganded, PDB code: 4jci was solved by M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Sojitra, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, M.Stead, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.94 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.095, 54.455, 253.040, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 20.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of CSAL_2705, A Putative Hydroxyproline Epimerase From Chromohalobacter Salexigens (Target Efi-506486), Space Group P212121, Unliganded (pdb code 4jci). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of CSAL_2705, A Putative Hydroxyproline Epimerase From Chromohalobacter Salexigens (Target Efi-506486), Space Group P212121, Unliganded, PDB code: 4jci:

Sodium binding site 1 out of 1 in 4jci

Go back to Sodium Binding Sites List in 4jci
Sodium binding site 1 out of 1 in the Crystal Structure of CSAL_2705, A Putative Hydroxyproline Epimerase From Chromohalobacter Salexigens (Target Efi-506486), Space Group P212121, Unliganded


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of CSAL_2705, A Putative Hydroxyproline Epimerase From Chromohalobacter Salexigens (Target Efi-506486), Space Group P212121, Unliganded within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na401

b:42.8
occ:1.00
O A:ALA218 2.3 21.5 1.0
O A:ASP215 2.4 35.4 1.0
O A:HOH624 2.4 32.7 1.0
O A:HOH709 2.4 40.7 1.0
O A:HOH662 2.5 41.0 1.0
H A:ASP215 3.2 28.7 1.0
HA A:ASP219 3.4 21.0 1.0
C A:ALA218 3.5 21.8 1.0
C A:ASP215 3.6 35.4 1.0
O A:HOH764 3.7 47.3 1.0
H A:ALA218 3.7 31.0 1.0
N A:ASP215 4.0 23.9 1.0
CA A:ASP219 4.0 17.5 1.0
HB3 A:ASP215 4.0 36.3 1.0
C A:ASP219 4.1 14.5 1.0
O A:ASP219 4.2 16.0 1.0
N A:ASP219 4.2 15.0 1.0
N A:ALA218 4.3 25.8 1.0
CA A:ASP215 4.4 26.0 1.0
HA A:ARG216 4.4 57.2 1.0
HB3 A:ASP214 4.4 46.1 1.0
O A:ARG216 4.5 43.0 1.0
C A:ARG216 4.5 40.9 1.0
CA A:ALA218 4.6 20.6 1.0
N A:ARG216 4.6 36.9 1.0
CB A:ASP215 4.7 30.2 1.0
CA A:ARG216 4.7 47.6 1.0
N A:SER220 4.8 14.3 1.0
N A:GLU217 4.9 35.6 1.0
HA A:ASP214 4.9 33.2 1.0

Reference:

M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Sojitra, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, M.Stead, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of CSAL_2705, A Putative Hydroxyproline Epimerase From Chromohalobacter Salexigens (Target Efi-506486), Space Group P212121, Unliganded To Be Published.
Page generated: Mon Oct 7 16:14:12 2024

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