Sodium in PDB 4jb3: Crystal Structure of BT_0970, A Had Family Phosphatase From Bacteroides Thetaiotaomicron Vpi-5482, Target Efi-501083, with Bound Sodium and Glycerol, Closed Lid, Ordered Loop

The structure of Crystal Structure of BT_0970, A Had Family Phosphatase From Bacteroides Thetaiotaomicron Vpi-5482, Target Efi-501083, with Bound Sodium and Glycerol, Closed Lid, Ordered Loop, PDB code: 4jb3 was solved by M.W.Vetting, R.Toro, R.Bhosle, P.R.Kumar, A.Ghosh, N.F.Al Obaidi, M.Stead, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, D.Dunaway-Mariano, K.N.Allen, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.52 / 1.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	49.580, 91.190, 46.270, 90.00, 104.22, 90.00
R / Rfree (%)	14.6 / 17.2

The binding sites of Sodium atom in the Crystal Structure of BT_0970, A Had Family Phosphatase From Bacteroides Thetaiotaomicron Vpi-5482, Target Efi-501083, with Bound Sodium and Glycerol, Closed Lid, Ordered Loop (pdb code 4jb3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of BT_0970, A Had Family Phosphatase From Bacteroides Thetaiotaomicron Vpi-5482, Target Efi-501083, with Bound Sodium and Glycerol, Closed Lid, Ordered Loop, PDB code: 4jb3:

Sodium binding site 1 out of 1 in the Crystal Structure of BT_0970, A Had Family Phosphatase From Bacteroides Thetaiotaomicron Vpi-5482, Target Efi-501083, with Bound Sodium and Glycerol, Closed Lid, Ordered Loop


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of BT_0970, A Had Family Phosphatase From Bacteroides Thetaiotaomicron Vpi-5482, Target Efi-501083, with Bound Sodium and Glycerol, Closed Lid, Ordered Loop within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:12.2 occ:1.00 O A:GLY10 2.2 11.7 1.0 OD2 A:ASP8 2.2 14.8 1.0 OD1 A:ASP172 2.3 14.4 1.0 O A:HOH466 2.4 22.5 1.0 O A:HOH417 2.4 15.5 1.0 O A:HOH481 3.1 31.3 1.0 CG A:ASP8 3.3 10.4 1.0 CG A:ASP172 3.4 12.4 1.0 C A:GLY10 3.4 10.3 1.0 OD2 A:ASP172 3.7 16.4 1.0 OD1 A:ASP171 4.0 13.5 1.0 CA A:GLY11 4.1 7.1 1.0 OD1 A:ASP8 4.1 14.8 1.0 N A:GLY11 4.2 8.1 1.0 O A:HOH563 4.2 13.6 1.0 O A:HOH562 4.2 16.5 1.0 CB A:ASP8 4.2 8.5 1.0 CA A:GLY10 4.4 9.4 1.0 N A:ASP172 4.6 7.2 1.0 CB A:ASP172 4.7 8.3 1.0 N A:GLY10 4.7 8.2 1.0 O1 A:GOL302 4.7 33.1 1.0 O A:LYS39 4.7 22.2 1.0 CG A:ASP171 4.8 11.3 1.0 C A:GLY11 4.8 7.3 1.0 CD1 A:TYR40 4.8 20.8 1.0 N A:GLY173 4.9 8.3 1.0

M.W.Vetting, R.Toro, R.Bhosle, P.R.Kumar, A.Ghosh, N.F.Al Obaidi, M.Stead, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, D.Dunaway-Mariano, K.N.Allen, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of BT_0970, A Had Family Phosphatase From Bacteroides Thetaiotaomicron Vpi-5482, Target Efi-501083, with Bound Sodium and Glycerol, Closed Lid, Ordered Loop To Be Published.