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Sodium in PDB 4iuw: Crystal Structure of Pepo From Lactobacillus Rhamnosis HN001 (DR20)

Protein crystallography data

The structure of Crystal Structure of Pepo From Lactobacillus Rhamnosis HN001 (DR20), PDB code: 4iuw was solved by B.F.Anderson, K.M.Knapp, R.Holland, G.E.Norris, C.Christensson, H.Bratt, L.J.Collins, T.Coolbear, M.W.Lubbers, P.W.O.Toole, J.R.Reid, G.B.Jameson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.24 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.387, 83.756, 143.828, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 22.1

Other elements in 4iuw:

The structure of Crystal Structure of Pepo From Lactobacillus Rhamnosis HN001 (DR20) also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Pepo From Lactobacillus Rhamnosis HN001 (DR20) (pdb code 4iuw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Pepo From Lactobacillus Rhamnosis HN001 (DR20), PDB code: 4iuw:

Sodium binding site 1 out of 1 in 4iuw

Go back to Sodium Binding Sites List in 4iuw
Sodium binding site 1 out of 1 in the Crystal Structure of Pepo From Lactobacillus Rhamnosis HN001 (DR20)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Pepo From Lactobacillus Rhamnosis HN001 (DR20) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na703

b:41.3
occ:1.00
O A:HOH1187 2.1 33.0 1.0
O5 A:CIT702 2.2 15.9 1.0
O A:HOH964 2.3 26.4 1.0
O7 A:CIT702 2.3 18.5 1.0
C6 A:CIT702 3.2 18.1 1.0
C3 A:CIT702 3.4 18.3 1.0
O A:HOH1135 3.7 34.0 1.0
NH1 A:ARG596 4.1 12.7 1.0
O A:HOH1370 4.1 33.5 1.0
O A:HOH968 4.2 25.4 1.0
CH2 A:TRP572 4.2 17.1 1.0
CZ3 A:TRP572 4.3 17.3 1.0
O1 A:CIT702 4.3 21.5 1.0
O6 A:CIT702 4.4 19.7 1.0
C4 A:CIT702 4.4 15.5 1.0
C1 A:CIT702 4.4 22.1 1.0
C2 A:CIT702 4.5 20.3 1.0
OD1 A:ASN436 4.6 14.0 1.0
NE2 A:HIS590 4.7 13.9 1.0
O A:HOH830 4.7 16.3 1.0
CD2 A:HIS590 4.7 14.7 1.0
CE1 A:HIS590 4.9 15.0 1.0
O A:HOH1357 4.9 42.7 1.0
CG A:HIS590 5.0 13.7 1.0

Reference:

B.F.Anderson, K.M.Knapp, R.Holland, G.E.Norris, C.Christensson, H.Bratt, L.J.Collins, T.Coolbear, M.W.Lubbers, P.W.O Toole, J.R.Reid, G.B.Jameson. Crystal Structure of Pepo From Lactobacillus Rhamnosis HN001 (DR20) To Be Published.
Page generated: Mon Oct 7 16:06:53 2024

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