Sodium in PDB 4i8p: Crystal Structure of Aminoaldehyde Dehydrogenase 1A From Zea Mays (ZMAMADH1A)

All present enzymatic activity of Crystal Structure of Aminoaldehyde Dehydrogenase 1A From Zea Mays (ZMAMADH1A):
1.2.1.19;

The structure of Crystal Structure of Aminoaldehyde Dehydrogenase 1A From Zea Mays (ZMAMADH1A), PDB code: 4i8p was solved by S.Morera, A.Vigouroux, D.Kopecny, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.55 / 1.95
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	181.190, 49.890, 154.530, 90.00, 124.15, 90.00
R / Rfree (%)	17.7 / 21

The binding sites of Sodium atom in the Crystal Structure of Aminoaldehyde Dehydrogenase 1A From Zea Mays (ZMAMADH1A) (pdb code 4i8p). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Aminoaldehyde Dehydrogenase 1A From Zea Mays (ZMAMADH1A), PDB code: 4i8p:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Aminoaldehyde Dehydrogenase 1A From Zea Mays (ZMAMADH1A)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Aminoaldehyde Dehydrogenase 1A From Zea Mays (ZMAMADH1A) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na602 b:25.3 occ:1.00 O A:HOH701 2.3 19.6 1.0 O A:ASP101 2.3 24.4 1.0 O A:LEU191 2.4 21.9 1.0 O A:HOH919 2.4 27.1 1.0 OD1 A:ASP101 2.5 23.2 1.0 C A:ASP101 3.3 24.5 1.0 O A:VAL30 3.5 30.7 1.0 C A:LEU191 3.5 22.6 1.0 CG A:ASP101 3.6 24.2 1.0 CA A:ASP101 3.8 20.1 1.0 O A:HOH1034 3.9 39.8 1.0 O A:HOH718 4.2 20.0 1.0 CB A:ASP101 4.2 21.5 1.0 N A:VAL30 4.3 25.5 1.0 CA A:ALA192 4.4 16.6 1.0 N A:ALA192 4.4 18.0 1.0 CG1 A:VAL29 4.4 25.6 1.0 O A:HOH825 4.4 23.6 1.0 CA A:LEU191 4.5 19.7 1.0 N A:CYS102 4.5 21.1 1.0 C A:VAL30 4.5 30.7 1.0 OD2 A:ASP101 4.6 23.3 1.0 CB A:ALA192 4.7 16.4 1.0 CA A:CYS102 4.8 20.4 1.0 CG2 A:VAL339 4.9 21.1 1.0 CA A:VAL30 4.9 26.6 1.0 CA A:VAL29 5.0 21.7 1.0 O A:VAL339 5.0 22.5 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Aminoaldehyde Dehydrogenase 1A From Zea Mays (ZMAMADH1A)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Aminoaldehyde Dehydrogenase 1A From Zea Mays (ZMAMADH1A) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na602 b:32.4 occ:1.00 O B:LEU191 2.2 32.4 1.0 O B:ASP101 2.2 30.5 1.0 O B:HOH845 2.3 30.1 1.0 O B:HOH773 2.5 35.4 1.0 OD1 B:ASP101 2.5 30.8 1.0 C B:ASP101 3.3 31.0 1.0 C B:LEU191 3.4 31.3 1.0 O B:VAL30 3.5 36.3 1.0 CG B:ASP101 3.6 31.2 1.0 CA B:ASP101 3.7 28.7 1.0 O B:HOH863 3.9 41.7 1.0 CB B:ASP101 4.2 29.1 1.0 O B:HOH770 4.2 27.6 1.0 O B:HOH850 4.2 30.9 1.0 CA B:ALA192 4.3 27.5 1.0 N B:ALA192 4.3 27.3 1.0 N B:CYS102 4.4 26.2 1.0 N B:VAL30 4.4 33.5 1.0 CA B:LEU191 4.4 26.2 1.0 CB B:ALA192 4.5 28.4 1.0 OD2 B:ASP101 4.5 32.8 1.0 C B:VAL30 4.5 36.9 1.0 CG1 B:VAL29 4.6 36.3 1.0 CA B:CYS102 4.8 25.2 1.0 CG2 B:VAL339 4.9 27.5 1.0 O B:VAL339 4.9 27.2 1.0

D.Kopecny, R.Koncitikova, M.Tylichova, A.Vigouroux, H.Moskalikova, M.Soural, M.Sebela, S.Morera. Plant ALDH10 Family: Identifying Critical Residues For Substrate Specificity and Trapping A Thiohemiacetal Intermediate. J.Biol.Chem. V. 288 9491 2013.
ISSN: ISSN 0021-9258
PubMed: 23408433
DOI: 10.1074/JBC.M112.443952