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Sodium in PDB 4h3l: Mplum-E16P

Protein crystallography data

The structure of Mplum-E16P, PDB code: 4h3l was solved by M.M.Moore, R.A.Chica, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.87 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 61.229, 76.888, 95.801, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 22.7

Sodium Binding Sites:

The binding sites of Sodium atom in the Mplum-E16P (pdb code 4h3l). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Mplum-E16P, PDB code: 4h3l:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 4h3l

Go back to Sodium Binding Sites List in 4h3l
Sodium binding site 1 out of 2 in the Mplum-E16P


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mplum-E16P within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:30.2
occ:1.00
NA A:NA301 0.0 30.2 1.0
NA A:NA301 0.1 30.3 0.0
O A:HOH602 3.3 36.0 1.0
OG A:SER222 3.6 47.1 1.0
NH1 A:ARG220 3.7 25.7 1.0
CE A:LYS194 4.2 37.4 1.0
NZ A:LYS194 4.2 36.8 1.0
O A:SER222 4.2 54.0 1.0
NH2 A:ARG220 4.4 33.0 1.0
CD A:LYS194 4.4 31.5 1.0
CB A:SER222 4.4 36.0 1.0
CA A:SER222 4.5 33.0 1.0
CG A:LYS194 4.5 30.1 1.0
CZ A:ARG220 4.5 26.2 1.0
C A:SER222 4.7 47.1 1.0
O A:HOH537 4.8 39.3 1.0

Sodium binding site 2 out of 2 in 4h3l

Go back to Sodium Binding Sites List in 4h3l
Sodium binding site 2 out of 2 in the Mplum-E16P


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Mplum-E16P within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:30.3
occ:0.00
NA A:NA301 0.0 30.3 0.0
NA A:NA301 0.1 30.2 1.0
O A:HOH602 3.4 36.0 1.0
OG A:SER222 3.5 47.1 1.0
NH1 A:ARG220 3.7 25.7 1.0
O A:SER222 4.1 54.0 1.0
CE A:LYS194 4.2 37.4 1.0
NZ A:LYS194 4.2 36.8 1.0
CB A:SER222 4.4 36.0 1.0
CA A:SER222 4.4 33.0 1.0
CD A:LYS194 4.5 31.5 1.0
NH2 A:ARG220 4.5 33.0 1.0
CG A:LYS194 4.5 30.1 1.0
CZ A:ARG220 4.6 26.2 1.0
C A:SER222 4.7 47.1 1.0
O A:HOH537 4.7 39.3 1.0

Reference:

M.M.Moore, S.K.Oteng-Pabi, A.T.Pandelieva, S.L.Mayo, R.A.Chica. Recovery of Red Fluorescent Protein Chromophore Maturation Deficiency Through Rational Design. Plos One V. 7 52463 2012.
ISSN: ESSN 1932-6203
PubMed: 23285050
DOI: 10.1371/JOURNAL.PONE.0052463
Page generated: Mon Oct 7 15:43:44 2024

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