Sodium in PDB 4goh: Structure of the Substrate-Free Hmuo, Ho From Corynebacterium Diphtheriae

All present enzymatic activity of Structure of the Substrate-Free Hmuo, Ho From Corynebacterium Diphtheriae:
1.14.99.3;

The structure of Structure of the Substrate-Free Hmuo, Ho From Corynebacterium Diphtheriae, PDB code: 4goh was solved by M.Unno, M.Ikeda-Saito, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	57.489, 61.916, 63.086, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 21.6

The binding sites of Sodium atom in the Structure of the Substrate-Free Hmuo, Ho From Corynebacterium Diphtheriae (pdb code 4goh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of the Substrate-Free Hmuo, Ho From Corynebacterium Diphtheriae, PDB code: 4goh:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of the Substrate-Free Hmuo, Ho From Corynebacterium Diphtheriae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Substrate-Free Hmuo, Ho From Corynebacterium Diphtheriae within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1007 b:56.5 occ:1.00 O A:HOH1205 2.3 37.0 1.0 CG A:MET29 3.9 20.1 1.0 CD1 A:LEU33 4.1 16.7 1.0 N A:SER30 4.2 17.7 1.0 CB A:MET29 4.3 17.3 1.0 CA A:SER30 4.3 18.0 1.0 C A:MET29 4.4 17.2 1.0 O A:HOH1118 4.6 24.7 1.0 C3 A:GOL1004 4.7 63.6 1.0 O A:MET29 4.7 17.2 1.0 CB A:SER30 4.8 20.2 1.0

Sodium binding site 2 out of 2 in the Structure of the Substrate-Free Hmuo, Ho From Corynebacterium Diphtheriae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of the Substrate-Free Hmuo, Ho From Corynebacterium Diphtheriae within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1008 b:53.4 occ:1.00 O A:HOH1269 2.2 42.4 1.0 CE1 A:HIS20 3.4 70.4 1.0 CB A:ALA23 3.8 57.0 1.0 ND1 A:HIS20 3.8 69.8 1.0 ND1 A:HIS205 4.0 39.1 1.0 CE1 A:HIS205 4.1 40.6 1.0 CA A:HIS25 4.2 40.9 1.0 O A:GLU24 4.2 47.8 1.0 NE2 A:HIS20 4.3 70.2 1.0 O A:HIS20 4.5 65.9 1.0 O A:ALA23 4.5 55.8 1.0 C A:GLU24 4.6 47.5 1.0 O A:HOH1121 4.7 27.0 1.0 N A:HIS25 4.7 44.0 1.0 C A:ALA23 4.8 55.2 1.0 N A:SER26 4.8 32.7 1.0 CG A:HIS205 4.8 33.2 1.0 ND1 A:HIS25 4.9 45.0 1.0 CG A:HIS20 4.9 67.9 1.0 CA A:ALA23 4.9 57.4 1.0 CB A:HIS25 5.0 41.7 1.0 NE2 A:HIS205 5.0 40.4 1.0

M.Unno, A.Ardevol, C.Rovira, M.Ikeda-Saito. Crystal Structure of the Substrate-Free and the Product-Bound Forms of Hmuo, A Heme Oxygenase From Corynebacterium Diphtheriae To Be Published.