Sodium in PDB 4gir: Crystal Structure of An Enolase Family Member From Vibrio Harveyi (Efi-Target 501692) with Homology to Mannonate Dehydratase, with Mg, Ethylene Glycol and Sulfate Bound (Ordered Loops, Space Group P41212)

The structure of Crystal Structure of An Enolase Family Member From Vibrio Harveyi (Efi-Target 501692) with Homology to Mannonate Dehydratase, with Mg, Ethylene Glycol and Sulfate Bound (Ordered Loops, Space Group P41212), PDB code: 4gir was solved by M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Sojitra, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzymefunction Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.23 / 2.00
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	146.836, 146.836, 169.524, 90.00, 90.00, 90.00
R / Rfree (%)	14.8 / 19.3

The structure of Crystal Structure of An Enolase Family Member From Vibrio Harveyi (Efi-Target 501692) with Homology to Mannonate Dehydratase, with Mg, Ethylene Glycol and Sulfate Bound (Ordered Loops, Space Group P41212) also contains other interesting chemical elements:

Magnesium	(Mg)	4 atoms
Chlorine	(Cl)	9 atoms

The binding sites of Sodium atom in the Crystal Structure of An Enolase Family Member From Vibrio Harveyi (Efi-Target 501692) with Homology to Mannonate Dehydratase, with Mg, Ethylene Glycol and Sulfate Bound (Ordered Loops, Space Group P41212) (pdb code 4gir). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of An Enolase Family Member From Vibrio Harveyi (Efi-Target 501692) with Homology to Mannonate Dehydratase, with Mg, Ethylene Glycol and Sulfate Bound (Ordered Loops, Space Group P41212), PDB code: 4gir:

Sodium binding site 1 out of 1 in the Crystal Structure of An Enolase Family Member From Vibrio Harveyi (Efi-Target 501692) with Homology to Mannonate Dehydratase, with Mg, Ethylene Glycol and Sulfate Bound (Ordered Loops, Space Group P41212)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of An Enolase Family Member From Vibrio Harveyi (Efi-Target 501692) with Homology to Mannonate Dehydratase, with Mg, Ethylene Glycol and Sulfate Bound (Ordered Loops, Space Group P41212) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na402 b:14.7 occ:1.00 O D:ASN247 2.3 14.4 1.0 O B:ASN247 2.3 10.4 1.0 O D:HOH567 2.5 9.8 1.0 C D:ASN247 3.4 13.0 1.0 C B:ASN247 3.4 10.1 1.0 CA B:GLN248 4.1 11.1 1.0 CA D:GLN248 4.1 14.2 1.0 N B:GLN248 4.2 10.0 1.0 N D:GLN248 4.2 10.7 1.0 CB B:ASN247 4.3 19.3 1.0 CB B:GLN248 4.3 14.6 1.0 CB D:GLN248 4.3 16.2 1.0 CB D:ASN247 4.3 15.6 1.0 CA D:ASN247 4.3 11.8 1.0 CA B:ASN247 4.4 12.8 1.0

M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Sojitra, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of An Enolase Family Member From Vibrio Harveyi (Efi-Target 501692) with Homology to Mannonate Dehydratase, with Mg, Ethylene Glycol and Sulfate Bound (Ordered Loops, Space Group P41212) To Be Published.