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Sodium in PDB 4g5h: Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme Cape From Staphylococcus Aureus in Complex with By-Product

Enzymatic activity of Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme Cape From Staphylococcus Aureus in Complex with By-Product

All present enzymatic activity of Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme Cape From Staphylococcus Aureus in Complex with By-Product:
4.2.1.115;

Protein crystallography data

The structure of Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme Cape From Staphylococcus Aureus in Complex with By-Product, PDB code: 4g5h was solved by T.Miyafusa, J.M.M.Caaveiro, Y.Tanaka, K.Tsumoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.80 / 1.88
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 124.030, 124.030, 103.161, 90.00, 90.00, 120.00
R / Rfree (%) 17.5 / 20.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme Cape From Staphylococcus Aureus in Complex with By-Product (pdb code 4g5h). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme Cape From Staphylococcus Aureus in Complex with By-Product, PDB code: 4g5h:

Sodium binding site 1 out of 1 in 4g5h

Go back to Sodium Binding Sites List in 4g5h
Sodium binding site 1 out of 1 in the Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme Cape From Staphylococcus Aureus in Complex with By-Product


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme Cape From Staphylococcus Aureus in Complex with By-Product within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na418

b:21.2
occ:1.00
 O A:HOH577 2.3 43.4 1.0
O A:HOH560 2.4 33.3 1.0
O A:HOH561 2.5 33.9 1.0
O A:SER149 2.5 20.6 1.0
O A:ILE152 2.6 22.2 1.0
O1 A:FMT415 3.4 37.3 1.0
C A:ILE152 3.5 24.8 1.0
O A:ARG150 3.6 26.9 1.0
C A:SER149 3.8 21.2 1.0
C A:ARG150 3.8 24.3 1.0
N A:ILE152 4.0 24.3 1.0
CA A:ARG153 4.1 26.1 1.0
CA A:ARG150 4.1 20.0 1.0
CG2 A:THR218 4.1 18.3 1.0
N A:ARG153 4.2 24.4 1.0
O A:HOH530 4.4 21.4 1.0
C A:FMT415 4.4 28.9 1.0
N A:SER154 4.4 26.0 1.0
CA A:ILE152 4.4 24.0 1.0
N A:ARG150 4.4 19.6 1.0
N A:ASN151 4.5 24.5 1.0
O A:HOH559 4.5 24.0 1.0
C A:ARG153 4.6 26.9 1.0
O2 A:FMT415 4.6 48.4 1.0
C A:ASN151 4.8 28.9 1.0
CA A:SER149 4.8 20.3 1.0

Reference:

T.Miyafusa, J.M.Caaveiro, Y.Tanaka, K.Tsumoto. Dynamic Elements Govern the Catalytic Activity of Cape, A Capsular Polysaccharide-Synthesizing Enzyme From Staphylococcus Aureus. Febs Lett. V. 587 3824 2013.
ISSN: ISSN 0014-5793
PubMed: 24157361
DOI: 10.1016/J.FEBSLET.2013.10.009
Page generated: Mon Oct 7 15:31:13 2024

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