Sodium in PDB 4eik: Crystal Structure of the Human Fyn SH3 Domain in Complex with the Synthetic Peptide VSL12

Enzymatic activity of Crystal Structure of the Human Fyn SH3 Domain in Complex with the Synthetic Peptide VSL12

All present enzymatic activity of Crystal Structure of the Human Fyn SH3 Domain in Complex with the Synthetic Peptide VSL12:
2.7.10.2;

Protein crystallography data

The structure of Crystal Structure of the Human Fyn SH3 Domain in Complex with the Synthetic Peptide VSL12, PDB code: 4eik was solved by A.Camara-Artigas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	19.66 / 1.60
*Space group*	P 6₃
*Cell size a, b, c (Å), α, β, γ (°)*	81.843, 81.843, 35.904, 90.00, 90.00, 120.00
*R / R_free (%)*	17.4 / 19.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Human Fyn SH3 Domain in Complex with the Synthetic Peptide VSL12 (pdb code 4eik). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Human Fyn SH3 Domain in Complex with the Synthetic Peptide VSL12, PDB code: 4eik:

Sodium binding site 1 out of 1 in 4eik

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Sodium Binding Sites List in 4eik

Sodium binding site 1 out of 1 in the Crystal Structure of the Human Fyn SH3 Domain in Complex with the Synthetic Peptide VSL12

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Human Fyn SH3 Domain in Complex with the Synthetic Peptide VSL12 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na201 b:31.0 occ:1.00	O	A:VAL138	2.3	19.6	1.0
	O	A:SER135	2.3	18.1	1.0
	C	A:SER135	3.5	15.4	1.0
	C	A:VAL138	3.5	17.9	1.0
	CA	A:ASN136	4.1	14.4	1.0
	N	A:VAL138	4.2	14.7	1.0
	N	A:ASN136	4.3	12.8	1.0
	C	A:ASN136	4.4	17.1	1.0
	CA	A:VAL138	4.4	16.2	1.0
	CG2	A:VAL138	4.4	17.7	1.0
	N	A:ALA139	4.5	16.8	1.0
	CA	A:ALA139	4.5	18.7	1.0
	CA	A:SER135	4.6	15.2	1.0
	O	A:ASN136	4.6	19.4	1.0
	O	A:HOH313	4.7	48.5	1.0
	CB	A:SER135	4.8	18.6	1.0
	N	A:TYR137	4.9	13.2	1.0
	O	A:HOH307	4.9	40.4	1.0

Reference:

Q.Chen, M.Georgiadis. Crystallization of and Selenomethionine Phasing Strategy For A Setmar-Dna Complex. Acta Crystallogr F Struct V. 72 713 2016BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 27599863
DOI: 10.1107/S2053230X16012723

Page generated: Mon Oct 7 15:09:48 2024

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