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Sodium in PDB 4egs: Crystal Structure Analysis of Low Molecular Weight Protein Tyrosine Phosphatase From T. Tengcongensis

Protein crystallography data

The structure of Crystal Structure Analysis of Low Molecular Weight Protein Tyrosine Phosphatase From T. Tengcongensis, PDB code: 4egs was solved by X.F.Cao, X.Y.Liu, L.F.Li, X.D.Su, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.17 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 35.964, 33.176, 117.410, 90.00, 90.05, 90.00
R / Rfree (%) 19.3 / 21.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure Analysis of Low Molecular Weight Protein Tyrosine Phosphatase From T. Tengcongensis (pdb code 4egs). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure Analysis of Low Molecular Weight Protein Tyrosine Phosphatase From T. Tengcongensis, PDB code: 4egs:

Sodium binding site 1 out of 1 in 4egs

Go back to Sodium Binding Sites List in 4egs
Sodium binding site 1 out of 1 in the Crystal Structure Analysis of Low Molecular Weight Protein Tyrosine Phosphatase From T. Tengcongensis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure Analysis of Low Molecular Weight Protein Tyrosine Phosphatase From T. Tengcongensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na202

b:37.4
occ:1.00
O B:GLY115 3.5 34.0 1.0
O B:MET85 3.5 35.3 1.0
C B:MET85 3.8 31.9 1.0
CB B:THR106 3.8 33.0 1.0
CG B:LYS108 3.8 34.1 1.0
N B:LYS108 3.8 32.8 1.0
O B:ALA84 3.8 32.6 1.0
CG2 B:ILE107 3.8 28.9 1.0
N B:VAL117 3.9 34.4 1.0
CA B:ASP116 3.9 36.2 1.0
CB B:LYS108 3.9 33.9 1.0
OG1 B:THR106 4.0 35.7 1.0
N B:ILE107 4.0 31.4 1.0
N B:ALA86 4.1 32.7 1.0
C B:ASP116 4.2 36.2 1.0
CG2 B:VAL117 4.2 33.2 1.0
C B:GLY115 4.2 34.2 1.0
CA B:ALA86 4.2 32.5 1.0
O B:HOH309 4.3 30.3 1.0
N B:ASP116 4.4 37.4 1.0
CA B:MET85 4.5 30.1 1.0
CA B:LYS108 4.5 33.9 1.0
C B:THR106 4.5 32.5 1.0
OD2 B:ASP116 4.6 36.9 1.0
CA B:THR106 4.6 33.4 1.0
CA B:ILE107 4.7 30.6 1.0
C B:ALA84 4.7 31.1 1.0
C B:ILE107 4.7 31.8 1.0
C B:ALA86 4.8 33.0 1.0
CB B:VAL117 4.8 33.8 1.0
CB B:ILE107 4.9 30.0 1.0
CG2 B:THR106 4.9 33.9 1.0
CA B:VAL117 4.9 35.4 1.0

Reference:

X.F.Cao, X.Y.Liu, L.F.Li, X.D.Su. Crystal Structure Analysis of Low Molecular Weight Protein Tyrosine Phosphatase From T. Tengcongensis To Be Published.
Page generated: Sun Aug 17 19:08:20 2025

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