Sodium in PDB 4efd: Crystal Structure of An M17 Aminopeptidase From Trypanosoma Brucei, TB427TMP.02.4440

The structure of Crystal Structure of An M17 Aminopeptidase From Trypanosoma Brucei, TB427TMP.02.4440, PDB code: 4efd was solved by A.K.Wernimont, K.T.Osman, P.Loppnau, C.H.Arrowsmith, A.M.Edwards, C.Bountra, R.Hui, Y.H.Lin, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.45
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	161.916, 161.740, 176.315, 90.00, 90.00, 90.00
R / Rfree (%)	22.7 / 25.3

The structure of Crystal Structure of An M17 Aminopeptidase From Trypanosoma Brucei, TB427TMP.02.4440 also contains other interesting chemical elements:

Manganese

(Mn)

8 atoms

The binding sites of Sodium atom in the Crystal Structure of An M17 Aminopeptidase From Trypanosoma Brucei, TB427TMP.02.4440 (pdb code 4efd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of An M17 Aminopeptidase From Trypanosoma Brucei, TB427TMP.02.4440, PDB code: 4efd:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of An M17 Aminopeptidase From Trypanosoma Brucei, TB427TMP.02.4440


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of An M17 Aminopeptidase From Trypanosoma Brucei, TB427TMP.02.4440 within 5.0Å range: probe atom residue distance (Å) B Occ C:Na603 b:67.6 occ:1.00 NZ C:LYS283 2.8 55.0 1.0 CG2 C:THR392 3.9 50.4 1.0 N C:THR392 4.2 50.3 1.0 CE C:LYS283 4.2 54.9 1.0 CA C:PHE391 4.6 50.6 1.0 CB C:PHE391 4.6 50.7 1.0 CD C:LYS283 4.7 54.5 1.0 O C:THR392 4.7 50.0 1.0 C C:PHE391 4.9 50.5 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of An M17 Aminopeptidase From Trypanosoma Brucei, TB427TMP.02.4440


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of An M17 Aminopeptidase From Trypanosoma Brucei, TB427TMP.02.4440 within 5.0Å range: probe atom residue distance (Å) B Occ F:Na605 b:47.9 occ:1.00 CA F:SER97 4.2 40.1 1.0 N F:LYS98 4.2 39.5 1.0 CB F:SER97 4.3 40.1 1.0 O B:HOH736 4.3 42.7 1.0 CG F:LYS98 4.4 39.5 1.0 OG F:SER97 4.5 40.3 1.0 C F:SER97 4.7 39.8 1.0

A.K.Wernimont, K.T.Osman, P.Loppnau, C.H.Arrowsmith, A.M.Edwards, C.Bountra, R.Hui, Y.H.Lin. Crystal Structure of An M17 Aminopeptidase From Trypanosoma Brucei, TB427TMP.02.4440 To Be Published.