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Sodium in PDB 4e77: 2.0A Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis CO92

Enzymatic activity of 2.0A Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis CO92

All present enzymatic activity of 2.0A Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis CO92:
5.4.3.8;

Protein crystallography data

The structure of 2.0A Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis CO92, PDB code: 4e77 was solved by J.S.Brunzelle, W.Wawrzak, O.Onopriyenko, W.F.Anderson, A.Savchenko, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.00
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 60.540, 60.540, 182.480, 90.00, 90.00, 120.00
R / Rfree (%) 16 / 19.7

Sodium Binding Sites:

The binding sites of Sodium atom in the 2.0A Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis CO92 (pdb code 4e77). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 2.0A Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis CO92, PDB code: 4e77:

Sodium binding site 1 out of 1 in 4e77

Go back to Sodium Binding Sites List in 4e77
Sodium binding site 1 out of 1 in the 2.0A Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis CO92


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 2.0A Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis CO92 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na501

b:19.1
occ:1.00
 O A:HOH932 2.2 40.7 1.0
OD2 A:ASP329 2.4 36.6 1.0
O A:HOH646 2.6 23.9 1.0
O A:HOH778 2.9 53.0 1.0
CG A:ASP329 3.3 28.2 1.0
OD1 A:ASP329 3.5 26.1 1.0
O A:HOH843 4.2 54.5 1.0
CG2 A:THR325 4.3 20.0 1.0
O A:HOH789 4.3 33.8 1.0
CB A:ASP329 4.6 17.8 1.0
O A:HOH614 4.7 24.4 1.0
O A:HOH662 4.7 25.8 1.0

Reference:

J.S.Brunzelle, W.Wawrzak, O.Onopriyenko, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectiousdiseases. 2.0A Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis CO92 To Be Published.
Page generated: Sun Aug 17 19:06:38 2025

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