Sodium in PDB 4drr: Cell Attachment Protein VP8* of A Human Rotavirus Specifically Interacts with A-Type Histo-Blood Group Antigen

The structure of Cell Attachment Protein VP8* of A Human Rotavirus Specifically Interacts with A-Type Histo-Blood Group Antigen, PDB code: 4drr was solved by L.Hu, S.E.Crawford, R.Czako, N.W.Cortes-Penfield, D.F.Smith, J.Le Pendu, M.K.Estes, B.V.V.Prasad, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.79 / 1.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	43.758, 34.923, 44.096, 90.00, 95.46, 90.00
R / Rfree (%)	17.8 / 21.6

The binding sites of Sodium atom in the Cell Attachment Protein VP8* of A Human Rotavirus Specifically Interacts with A-Type Histo-Blood Group Antigen (pdb code 4drr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cell Attachment Protein VP8* of A Human Rotavirus Specifically Interacts with A-Type Histo-Blood Group Antigen, PDB code: 4drr:

Sodium binding site 1 out of 1 in the Cell Attachment Protein VP8* of A Human Rotavirus Specifically Interacts with A-Type Histo-Blood Group Antigen


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cell Attachment Protein VP8* of A Human Rotavirus Specifically Interacts with A-Type Histo-Blood Group Antigen within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:7.2 occ:1.00 OG A:SER131 3.1 11.6 1.0 NZ A:LYS139 3.3 12.2 1.0 N A:ASN133 3.4 8.1 1.0 OD1 A:ASN133 3.7 11.0 1.0 C A:SER131 3.8 7.3 1.0 CA A:ASN132 3.8 6.4 1.0 O A:SER131 3.8 8.3 1.0 N A:ASN132 3.8 6.1 1.0 CG A:ASN133 3.8 9.7 1.0 CB A:SER131 3.9 8.4 1.0 C A:ASN132 4.0 7.8 1.0 CB A:ASN133 4.1 11.6 1.0 CA A:ASN133 4.3 8.1 1.0 ND2 A:ASN133 4.4 16.0 1.0 CA A:SER131 4.5 7.0 1.0 O A:HOH457 4.5 16.1 1.0 O A:HOH521 4.7 18.7 1.0 CE A:LYS139 4.7 12.9 1.0 O A:HOH441 4.7 10.1 1.0

L.Hu, S.E.Crawford, R.Czako, N.W.Cortes-Penfield, D.F.Smith, J.Le Pendu, M.K.Estes, B.V.Prasad. Cell Attachment Protein VP8* of A Human Rotavirus Specifically Interacts with A-Type Histo-Blood Group Antigen. Nature V. 485 256 2012.
ISSN: ISSN 0028-0836
PubMed: 22504179
DOI: 10.1038/NATURE10996