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Sodium in PDB 4cte: Crystal Structure of the Catalytic Domain of the Modular Laminarinase Zglamc Mutant E142S in Complex with A Thio- Oligosaccharide

Enzymatic activity of Crystal Structure of the Catalytic Domain of the Modular Laminarinase Zglamc Mutant E142S in Complex with A Thio- Oligosaccharide

All present enzymatic activity of Crystal Structure of the Catalytic Domain of the Modular Laminarinase Zglamc Mutant E142S in Complex with A Thio- Oligosaccharide:
3.2.1.39;

Protein crystallography data

The structure of Crystal Structure of the Catalytic Domain of the Modular Laminarinase Zglamc Mutant E142S in Complex with A Thio- Oligosaccharide, PDB code: 4cte was solved by A.Labourel, M.Jam, L.Legentil, B.Sylla, E.Ficko-Blean, J.H.Hehemann, V.Ferrieres, M.Czjzek, G.Michel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.11 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.010, 93.930, 142.280, 90.00, 90.00, 90.00
R / Rfree (%) 17.718 / 22.221

Other elements in 4cte:

The structure of Crystal Structure of the Catalytic Domain of the Modular Laminarinase Zglamc Mutant E142S in Complex with A Thio- Oligosaccharide also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Calcium (Ca) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Catalytic Domain of the Modular Laminarinase Zglamc Mutant E142S in Complex with A Thio- Oligosaccharide (pdb code 4cte). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Catalytic Domain of the Modular Laminarinase Zglamc Mutant E142S in Complex with A Thio- Oligosaccharide, PDB code: 4cte:

Sodium binding site 1 out of 1 in 4cte

Go back to Sodium Binding Sites List in 4cte
Sodium binding site 1 out of 1 in the Crystal Structure of the Catalytic Domain of the Modular Laminarinase Zglamc Mutant E142S in Complex with A Thio- Oligosaccharide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Catalytic Domain of the Modular Laminarinase Zglamc Mutant E142S in Complex with A Thio- Oligosaccharide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na285

b:31.5
occ:1.00
 O B:HOH2103 2.7 20.8 1.0
O B:GLU213 2.9 23.8 1.0
O B:CYS135 2.9 19.8 1.0
OD1 B:ASN126 3.0 24.5 1.0
ND2 B:ASN126 3.3 28.1 1.0
ND2 B:ASN216 3.3 26.8 1.0
CB B:ASN216 3.3 23.8 1.0
CG B:ASN126 3.4 24.7 1.0
CB B:GLU213 3.6 25.3 1.0
C B:GLU213 3.7 22.8 1.0
OE1 B:GLU213 3.8 29.9 1.0
CA B:GLY124 3.8 20.1 1.0
CE1 B:PHE218 3.8 20.3 1.0
CG B:ASN216 3.8 27.6 1.0
C B:CYS135 3.9 19.7 1.0
CA B:GLU213 3.9 25.2 1.0
CZ B:PHE218 4.2 18.6 1.0
CA B:CYS135 4.4 18.4 1.0
CG B:GLU213 4.5 29.0 1.0
CD B:GLU213 4.5 36.9 1.0
CA B:ASN216 4.5 23.9 1.0
C B:GLY124 4.6 17.9 1.0
CD1 B:PHE218 4.6 18.6 1.0
O B:GLU217 4.6 19.8 1.0
CB B:ASN126 4.6 23.7 1.0
N B:ASN216 4.8 23.4 1.0
N B:ASN126 4.8 18.9 1.0
N B:GLY124 4.8 18.6 1.0
N B:ASN125 4.9 19.1 1.0
C B:ASN216 4.9 22.6 1.0
N B:GLY136 5.0 18.6 1.0
N B:PHE214 5.0 22.7 1.0
CB B:CYS135 5.0 20.1 1.0

Reference:

A.Labourel, M.Jam, L.Legentil, B.Sylla, J.H.Hehemann, V.Ferrieres, M.Czjzek, G.Michel. Structural and Biochemical Characterization of the Laminarina Zglamc[GH16] From Zobellia Galactanivorans Suggests Preferred Recognition of Branched Laminarin Acta Crystallogr.,Sect.D V. 71 173 2015.
ISSN: ISSN 0907-4449
DOI: 10.1107/S139900471402450X
Page generated: Mon Oct 7 14:48:04 2024

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