Sodium in PDB 4cta: Competence or Damage-Inducible Protein Cina From Thermus Thermophilus

The structure of Competence or Damage-Inducible Protein Cina From Thermus Thermophilus, PDB code: 4cta was solved by J.Derrick, V.Karuppiah, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	65.89 / 2.21
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	74.590, 93.770, 131.790, 90.00, 90.00, 90.00
R / Rfree (%)	22.04 / 27.38

The structure of Competence or Damage-Inducible Protein Cina From Thermus Thermophilus also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Sodium atom in the Competence or Damage-Inducible Protein Cina From Thermus Thermophilus (pdb code 4cta). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Competence or Damage-Inducible Protein Cina From Thermus Thermophilus, PDB code: 4cta:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Competence or Damage-Inducible Protein Cina From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Competence or Damage-Inducible Protein Cina From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Na406 b:18.9 occ:1.00 O A:HOH2038 3.3 26.1 1.0 N A:LEU249 3.4 29.2 1.0 CB A:HIS213 3.6 32.4 1.0 CG A:HIS213 3.6 29.9 1.0 CB A:THR248 3.7 28.2 1.0 CA A:THR248 3.8 27.9 1.0 ND1 A:HIS213 3.8 32.1 1.0 CE1 A:TYR386 3.9 23.9 1.0 CH2 A:TRP242 4.0 30.0 1.0 C A:THR248 4.1 26.2 1.0 CG2 A:THR248 4.2 27.0 1.0 CB A:LEU249 4.2 26.8 1.0 CD2 A:HIS213 4.2 29.0 1.0 CD1 A:TYR386 4.4 20.0 1.0 CA A:LEU249 4.4 26.0 1.0 CZ2 A:TRP242 4.5 29.4 1.0 CG A:LEU249 4.5 28.5 1.0 CZ A:TYR386 4.5 22.8 1.0 CE1 A:HIS213 4.5 31.5 1.0 CD1 A:LEU249 4.7 23.6 1.0 NE2 A:HIS213 4.7 27.5 1.0 OH A:TYR386 4.7 25.4 1.0 OG1 A:THR248 4.9 28.7 1.0 CZ3 A:TRP242 5.0 27.6 1.0

Sodium binding site 2 out of 2 in the Competence or Damage-Inducible Protein Cina From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Competence or Damage-Inducible Protein Cina From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Na405 b:31.9 occ:1.00 OG1 A:THR266 2.5 17.7 1.0 OE2 A:GLU268 2.7 25.1 1.0 O A:VAL293 3.2 19.3 1.0 CB A:THR266 3.3 19.2 1.0 N A:VAL293 3.4 18.5 1.0 CD A:GLU268 3.4 23.4 1.0 CG A:GLU268 3.5 22.4 1.0 O A:THR266 3.6 19.2 1.0 CA A:GLY292 3.7 18.0 1.0 C A:GLY292 3.8 19.4 1.0 C A:THR266 3.8 20.8 1.0 C A:VAL293 3.8 17.3 1.0 OH A:TYR289 4.0 18.1 1.0 CA A:THR266 4.1 18.4 1.0 CA A:VAL293 4.1 19.1 1.0 N A:MET267 4.2 19.1 1.0 N A:GLU268 4.2 20.9 1.0 CB A:GLU268 4.3 19.4 1.0 CA A:MET267 4.3 19.0 1.0 OE1 A:GLU268 4.5 21.0 1.0 CG2 A:THR266 4.6 20.3 1.0 C A:MET267 4.6 19.9 1.0 N A:VAL294 4.6 17.1 1.0 CG2 A:VAL294 4.6 18.5 1.0 O A:GLY292 4.6 16.7 1.0 N A:GLY276 4.7 18.8 1.0 N A:THR266 4.8 18.1 1.0 N A:GLY292 4.8 18.2 1.0 CG2 B:VAL294 4.8 16.5 1.0 CA A:GLU268 4.9 22.1 1.0 CA A:GLY276 4.9 18.4 1.0

V.Karuppiah, A.Thistlethwaite, R.Dajani, J.Warwicker, J.P.Derrick. Structure and Mechanism of the Bifunctional Cina Enzyme From Thermus Thermophilus J.Biol.Chem. 201410.1074/Jbc.M114.608448.
ISSN: ESSN 1083-351X
PubMed: 25313401