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Sodium in PDB 4c76: Crystal Structure of the Fmn-Reductase Msue From Pseudomonas Putida KT2440.

Enzymatic activity of Crystal Structure of the Fmn-Reductase Msue From Pseudomonas Putida KT2440.

All present enzymatic activity of Crystal Structure of the Fmn-Reductase Msue From Pseudomonas Putida KT2440.:
1.5.1.38;

Protein crystallography data

The structure of Crystal Structure of the Fmn-Reductase Msue From Pseudomonas Putida KT2440., PDB code: 4c76 was solved by R.P.Gibson, M.Isupov, J.A.Littlechild, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.50 / 1.96
Space group P 64
Cell size a, b, c (Å), α, β, γ (°) 124.730, 124.730, 45.340, 90.00, 90.00, 120.00
R / Rfree (%) 14.511 / 19.252

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Fmn-Reductase Msue From Pseudomonas Putida KT2440. (pdb code 4c76). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Fmn-Reductase Msue From Pseudomonas Putida KT2440., PDB code: 4c76:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 4c76

Go back to Sodium Binding Sites List in 4c76
Sodium binding site 1 out of 2 in the Crystal Structure of the Fmn-Reductase Msue From Pseudomonas Putida KT2440.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Fmn-Reductase Msue From Pseudomonas Putida KT2440. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:24.0
occ:1.00
O A:SER105 2.3 16.6 1.0
O A:HOH2081 2.3 15.5 1.0
O A:GLU74 2.4 17.2 1.0
O A:HOH2084 2.4 26.5 1.0
O A:HOH2082 2.7 31.4 1.0
C A:GLU74 3.4 16.0 1.0
C A:SER105 3.4 19.0 1.0
O A:HOH2154 3.5 47.8 1.0
O A:HOH2098 3.9 42.9 1.0
CG2 A:VAL109 4.0 14.3 1.0
O A:ALA76 4.1 14.9 1.0
CA A:GLN75 4.1 15.5 1.0
CA A:SER105 4.2 18.4 1.0
N A:GLN75 4.2 15.8 1.0
CB A:SER105 4.2 19.5 1.0
CA A:GLU74 4.3 13.8 1.0
C A:GLN75 4.4 16.2 1.0
N A:LEU106 4.5 16.4 1.0
N A:ALA76 4.5 14.6 1.0
O A:ILE73 4.6 16.0 1.0
CA A:LEU106 4.6 13.1 1.0
CD2 A:LEU106 4.6 20.4 1.0
OG A:SER105 4.8 24.1 1.0
O A:GLN75 4.9 15.4 1.0

Sodium binding site 2 out of 2 in 4c76

Go back to Sodium Binding Sites List in 4c76
Sodium binding site 2 out of 2 in the Crystal Structure of the Fmn-Reductase Msue From Pseudomonas Putida KT2440.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Fmn-Reductase Msue From Pseudomonas Putida KT2440. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na201

b:20.2
occ:1.00
O B:HOH2042 2.2 17.0 1.0
O B:HOH2043 2.2 29.3 1.0
O B:HOH2047 2.3 22.9 1.0
O B:GLU74 2.4 15.7 1.0
O B:SER105 2.4 19.2 1.0
C B:GLU74 3.3 17.7 1.0
C B:SER105 3.5 21.5 1.0
CA B:GLN75 4.0 17.8 0.4
CA B:GLN75 4.0 18.1 0.6
N B:GLN75 4.0 16.7 1.0
CG2 B:VAL109 4.0 11.7 1.0
O B:ALA76 4.1 13.8 1.0
O B:HOH2062 4.2 33.8 1.0
CB B:SER105 4.2 21.8 1.0
CA B:SER105 4.2 18.7 1.0
CA B:GLU74 4.3 14.8 1.0
C B:GLN75 4.3 16.8 1.0
N B:ALA76 4.5 14.5 1.0
O B:HOH2046 4.5 48.4 1.0
N B:LEU106 4.6 14.3 1.0
O B:ILE73 4.6 16.8 1.0
CA B:LEU106 4.7 14.8 1.0
CD2 B:LEU106 4.8 16.6 1.0
O B:GLN75 4.9 20.2 1.0
OG B:SER105 4.9 23.0 1.0

Reference:

R.P.Gibson, M.Isupov, J.A.Littlechild. Crystal Structure of the Fmn-Reductase Msue From Pseudomonas Putida KT2440. To Be Published.
Page generated: Mon Oct 7 14:39:44 2024

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