Atomistry » Sodium » PDB 4b1a-4bkr » 4be5
Atomistry »
  Sodium »
    PDB 4b1a-4bkr »
      4be5 »

Sodium in PDB 4be5: V. Cholera Biofilm Scaffolding Protein Rbma

Protein crystallography data

The structure of V. Cholera Biofilm Scaffolding Protein Rbma, PDB code: 4be5 was solved by M.Maestre-Reyna, A.H.-J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.72 / 2.46
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 118.888, 118.888, 104.781, 90.00, 90.00, 90.00
R / Rfree (%) 18.28 / 23.434

Sodium Binding Sites:

The binding sites of Sodium atom in the V. Cholera Biofilm Scaffolding Protein Rbma (pdb code 4be5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the V. Cholera Biofilm Scaffolding Protein Rbma, PDB code: 4be5:

Sodium binding site 1 out of 1 in 4be5

Go back to Sodium Binding Sites List in 4be5
Sodium binding site 1 out of 1 in the V. Cholera Biofilm Scaffolding Protein Rbma


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of V. Cholera Biofilm Scaffolding Protein Rbma within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1274

b:42.8
occ:1.00
O A:HOH2120 2.3 39.0 1.0
O A:HOH2103 2.3 31.8 1.0
ND2 A:ASN199 3.1 34.8 1.0
CG A:ASN199 4.0 35.7 1.0
OD1 A:ASN199 4.0 40.0 1.0
NZ A:LYS221 4.2 31.6 1.0
CG2 A:ILE256 4.8 40.8 1.0
O A:HOH2052 4.8 44.2 1.0
CE A:LYS221 4.9 30.6 1.0

Reference:

M.Maestre-Reyna, W.Wu, A.H.Wang. Structural Insights Into Rbma, A Biofilm Scaffolding Protein of V. Cholerae. Plos One V. 8 82458 2013.
ISSN: ISSN 1932-6203
PubMed: 24340031
DOI: 10.1371/JOURNAL.PONE.0082458
Page generated: Mon Oct 7 14:30:40 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy