Sodium in PDB 4alo: Structure and Properties of H1 Crustacyanin From Lobster Homarus Americanus

The structure of Structure and Properties of H1 Crustacyanin From Lobster Homarus Americanus, PDB code: 4alo was solved by M.Ferrari, C.Folli, E.Pincolini, T.S.Mcclintock, M.Roessle, R.Berni, M.Cianci, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	62.99 / 2.37
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.368, 78.423, 105.625, 90.00, 90.00, 90.00
R / Rfree (%)	22.246 / 26.601

The binding sites of Sodium atom in the Structure and Properties of H1 Crustacyanin From Lobster Homarus Americanus (pdb code 4alo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Structure and Properties of H1 Crustacyanin From Lobster Homarus Americanus, PDB code: 4alo:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Structure and Properties of H1 Crustacyanin From Lobster Homarus Americanus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure and Properties of H1 Crustacyanin From Lobster Homarus Americanus within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1185 b:28.6 occ:1.00 O A:ASN42 2.4 30.2 1.0 OG1 A:THR41 2.7 27.3 1.0 O A:ASP131 2.9 27.4 1.0 NH2 A:ARG163 3.2 27.0 1.0 CD1 A:PHE132 3.3 22.6 1.0 N A:ASN42 3.4 29.3 1.0 CB A:THR41 3.4 27.9 1.0 CB A:PHE6 3.4 39.9 1.0 C A:ASN42 3.4 30.4 1.0 C A:THR41 3.5 28.5 1.0 O A:HOH2001 3.5 26.6 1.0 CE1 A:PHE132 3.8 22.8 1.0 CA A:ASN42 3.8 30.7 1.0 O A:THR41 3.8 28.8 1.0 CA A:PHE132 3.9 25.4 1.0 C A:ASP131 4.0 27.3 1.0 CB A:ASN42 4.0 31.4 1.0 CA A:THR41 4.0 27.9 1.0 CG A:PHE132 4.1 24.2 1.0 O A:HOH2016 4.2 25.1 1.0 CZ A:ARG163 4.3 27.7 1.0 CG A:PHE6 4.4 37.4 1.0 CB A:PHE132 4.4 25.0 1.0 N A:PHE132 4.4 26.3 1.0 CA A:PHE6 4.4 40.6 1.0 O A:HOH2015 4.5 20.6 1.0 N A:ASN43 4.6 30.3 1.0 CD2 A:PHE6 4.6 34.9 1.0 NE A:ARG163 4.7 28.5 1.0 CG2 A:THR41 4.7 27.2 1.0 OD1 A:ASP131 4.8 29.7 1.0 CZ A:PHE132 4.8 22.3 1.0 N A:SER133 4.8 24.4 1.0 C A:PHE132 5.0 25.1 1.0

Sodium binding site 2 out of 3 in the Structure and Properties of H1 Crustacyanin From Lobster Homarus Americanus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure and Properties of H1 Crustacyanin From Lobster Homarus Americanus within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1186 b:22.2 occ:1.00 O A:VAL34 2.8 22.1 1.0 O A:ARG138 2.8 29.5 1.0 C A:ARG138 3.7 29.7 1.0 CA A:ARG138 3.7 28.6 1.0 CD A:ARG138 3.8 27.7 1.0 C A:VAL34 3.8 22.1 1.0 CB A:ARG138 3.9 28.3 1.0 CB A:VAL34 4.0 22.2 1.0 CE2 A:TYR36 4.1 25.7 1.0 CA A:VAL34 4.3 22.0 1.0 CG1 A:VAL34 4.3 21.9 1.0 CG A:ARG138 4.4 28.2 1.0 N A:VAL34 4.5 22.6 1.0 NH1 A:ARG138 4.6 24.8 1.0 CD2 A:TYR36 4.7 25.2 1.0 N A:TRP35 4.9 21.4 1.0 NE A:ARG138 4.9 26.2 1.0 N A:SER139 5.0 30.8 1.0

Sodium binding site 3 out of 3 in the Structure and Properties of H1 Crustacyanin From Lobster Homarus Americanus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Structure and Properties of H1 Crustacyanin From Lobster Homarus Americanus within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1185 b:99.4 occ:1.00 CD1 B:PHE58 3.3 51.5 1.0 N B:GLY60 3.4 52.0 1.0 CE1 B:PHE58 3.8 52.5 1.0 CA B:ASP59 3.9 51.4 1.0 O B:PHE58 4.0 49.9 1.0 C B:ASP59 4.0 51.8 1.0 C B:PHE58 4.2 49.6 1.0 CA B:GLY60 4.3 51.9 1.0 N B:ASP59 4.3 50.6 1.0 O B:GLY60 4.4 52.1 1.0 CG B:PHE58 4.4 50.3 1.0 C B:GLY60 4.7 52.0 1.0 CB B:PHE58 4.7 49.0 1.0

M.Ferrari, C.Folli, E.Pincolini, T.S.Mcclintock, M.Rossle, R.Berni, M.Cianci. Structural Characterization of Recombinant Crustacyanin Subunits From the Lobster Homarus Americanus. Acta Crystallogr.,Sect.F V. 68 846 2012.
ISSN: ISSN 1744-3091
PubMed: 22869108
DOI: 10.1107/S1744309112026103