Sodium in PDB 4ae4: The UBAP1 Subunit of Escrt-I Interacts with Ubiquitin Via A Novel Souba Domain

The structure of The UBAP1 Subunit of Escrt-I Interacts with Ubiquitin Via A Novel Souba Domain, PDB code: 4ae4 was solved by M.Agromayor, N.Soler, A.Caballe, T.Kueck, S.M.Freund, M.D.Allen, M.Bycroft, O.Perisic, Y.Ye, B.Mcdonald, H.Scheel, K.Hofmann, S.J.D.Neil, J.Martin-Serrano, R.L.Williams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.27 / 1.65
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	34.404, 43.480, 59.413, 102.58, 96.47, 113.24
R / Rfree (%)	14.9 / 19.1

The structure of The UBAP1 Subunit of Escrt-I Interacts with Ubiquitin Via A Novel Souba Domain also contains other interesting chemical elements:

Potassium

(K)

4 atoms

The binding sites of Sodium atom in the The UBAP1 Subunit of Escrt-I Interacts with Ubiquitin Via A Novel Souba Domain (pdb code 4ae4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The UBAP1 Subunit of Escrt-I Interacts with Ubiquitin Via A Novel Souba Domain, PDB code: 4ae4:

Sodium binding site 1 out of 1 in the The UBAP1 Subunit of Escrt-I Interacts with Ubiquitin Via A Novel Souba Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The UBAP1 Subunit of Escrt-I Interacts with Ubiquitin Via A Novel Souba Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1504 b:29.8 occ:1.00 OE B:MSO449 2.4 60.2 1.0 O B:HOH2073 2.7 40.1 1.0 CA B:MSO449 3.2 25.4 1.0 SE B:MSO449 3.3 53.1 1.0 CB B:MSO449 3.3 30.0 1.0 O B:HOH3001 3.6 48.7 1.0 N B:MSO449 3.6 24.2 1.0 CE B:MSO449 3.7 40.6 1.0 O B:HOH2055 3.7 67.2 1.0 CG B:MSO449 3.8 38.4 1.0 C B:GLU448 4.0 24.1 1.0 CG B:GLU448 4.0 39.2 1.0 O B:GLU448 4.2 26.5 1.0 CD B:GLU448 4.2 54.9 1.0 OE1 B:GLU448 4.3 56.8 1.0 CB B:GLU448 4.5 30.4 1.0 O B:GLU445 4.5 21.7 1.0 C B:MSO449 4.6 26.0 1.0 CE B:LYS478 4.7 33.5 1.0 O B:HOH2076 4.7 55.2 1.0 O A:HOH2044 4.9 28.2 1.0 OE2 B:GLU448 4.9 65.0 1.0 CA B:GLU448 4.9 23.9 1.0 O B:HOH2079 4.9 35.4 1.0 O B:MSO449 4.9 28.5 1.0

M.Agromayor, N.Soler, A.Caballe, T.Kueck, S.M.Freund, M.D.Allen, M.Bycroft, O.Perisic, Y.Ye, B.Mcdonald, H.Scheel, K.Hofmann, S.J.Neil, J.Martin-Serrano, R.L.Williams. The UBAP1 Subunit of Escrt-I Interacts with Ubiquitin Via A Souba Domain. Structure V. 20 414 2012.
ISSN: ISSN 1878-4186
PubMed: 22405001
DOI: 10.1016/J.STR.2011.12.013