Sodium in PDB 3zn6: VP16-VP17 Complex, A Complex of the Two Major Capsid Proteins of Bacteriophage P23-77

The structure of VP16-VP17 Complex, A Complex of the Two Major Capsid Proteins of Bacteriophage P23-77, PDB code: 3zn6 was solved by I.Rissanen, J.M.Grimes, A.Pawlowski, S.Mantynen, K.Harlos, J.K.H.Bamford, D.I.Stuart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.40 / 1.53
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	76.780, 69.610, 81.620, 90.00, 104.99, 90.00
R / Rfree (%)	17.2 / 19.7

The structure of VP16-VP17 Complex, A Complex of the Two Major Capsid Proteins of Bacteriophage P23-77 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the VP16-VP17 Complex, A Complex of the Two Major Capsid Proteins of Bacteriophage P23-77 (pdb code 3zn6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the VP16-VP17 Complex, A Complex of the Two Major Capsid Proteins of Bacteriophage P23-77, PDB code: 3zn6:

Sodium binding site 1 out of 1 in the VP16-VP17 Complex, A Complex of the Two Major Capsid Proteins of Bacteriophage P23-77


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of VP16-VP17 Complex, A Complex of the Two Major Capsid Proteins of Bacteriophage P23-77 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1167 b:27.4 occ:0.50 O B:HOH2151 2.8 34.6 0.5 O B:ARG35 2.9 21.1 1.0 C B:ARG35 3.8 19.4 1.0 CB B:GLN34 3.8 16.5 1.0 O B:HOH2016 3.8 36.6 1.0 OE1 B:GLN34 4.0 16.4 1.0 CG2 B:VAL36 4.1 16.3 1.0 CA B:VAL36 4.1 13.5 1.0 N B:VAL36 4.3 13.1 1.0 O B:HOH2015 4.4 19.2 1.0 N B:ARG35 4.4 14.1 1.0 CG B:GLN34 4.5 16.9 1.0 CD B:GLN34 4.6 14.4 1.0 CB B:VAL36 4.7 15.5 1.0 C B:GLN34 4.8 15.5 1.0 CA B:ARG35 4.8 14.0 1.0 CA B:GLN34 4.8 15.2 1.0 O B:HOH2001 5.0 38.5 1.0

I.Rissanen, J.M.Grimes, A.Pawlowski, S.Mantynen, K.Harlos, J.K.H.Bamford, D.I.Stuart. Bacteriophage P23-77 Capsid Protein Structures Reveal the Archetype of An Ancient Branch From A Major Virus Lineage. Structure V. 21 718 2013.
ISSN: ISSN 0969-2126
PubMed: 23623731
DOI: 10.1016/J.STR.2013.02.026