Sodium in PDB 3zdu: Crystal Structure of the Human CDKL3 Kinase Domain

All present enzymatic activity of Crystal Structure of the Human CDKL3 Kinase Domain:
2.7.11.22;

The structure of Crystal Structure of the Human CDKL3 Kinase Domain, PDB code: 3zdu was solved by P.Canning, J.M.Elkins, S.Goubin, P.Mahajan, A.C.W.Pike, A.Quigley, A.Mackenzie, E.P.Carpenter, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, A.Bullock, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.89 / 2.20
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	63.930, 63.930, 163.630, 90.00, 90.00, 120.00
R / Rfree (%)	21.4 / 26.2

The structure of Crystal Structure of the Human CDKL3 Kinase Domain also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of the Human CDKL3 Kinase Domain (pdb code 3zdu). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Human CDKL3 Kinase Domain, PDB code: 3zdu:

Sodium binding site 1 out of 1 in the Crystal Structure of the Human CDKL3 Kinase Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Human CDKL3 Kinase Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Na353 b:46.9 occ:1.00 O A:HOH2069 1.9 58.7 1.0 OD2 A:ASP125 2.2 57.1 1.0 OD2 A:ASP143 2.3 58.9 1.0 CG A:ASP143 3.1 54.7 1.0 OD1 A:ASP143 3.2 60.1 1.0 CG A:ASP125 3.4 49.3 1.0 OD2 A:ASP158 3.7 85.6 1.0 CD1 A:PHE146 3.8 63.3 1.0 CE1 A:PHE146 3.8 65.9 1.0 CB A:ASP125 4.0 47.6 1.0 ND2 A:ASN130 4.4 39.1 1.0 OD1 A:ASP125 4.4 48.2 1.0 O A:HOH2070 4.4 51.5 1.0 CB A:ASP143 4.5 50.3 1.0 NZ A:LYS127 4.5 49.0 1.0 CG A:ASP158 4.6 82.3 1.0 OD1 A:ASP158 4.8 82.6 1.0

P.Canning, J.M.Elkins, S.Goubin, P.Mahajan, A.C.W.Pike, A.Quigley, A.Mackenzie, E.P.Carpenter, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, A.Bullock. Crystal Structure of the Human CDKL3 Kinase Domain To Be Published.