Sodium in PDB 3wl2: Monoclinic Lysozyme at 0.96 A Resolution

All present enzymatic activity of Monoclinic Lysozyme at 0.96 A Resolution:
3.2.1.17;

The structure of Monoclinic Lysozyme at 0.96 A Resolution, PDB code: 3wl2 was solved by T.Matsumoto, A.Yamano, T.Hasegawa, M.Maeyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.05 / 0.96
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	27.353, 62.563, 60.090, 90.00, 90.11, 90.00
R / Rfree (%)	16 / 19.5

The binding sites of Sodium atom in the Monoclinic Lysozyme at 0.96 A Resolution (pdb code 3wl2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Monoclinic Lysozyme at 0.96 A Resolution, PDB code: 3wl2:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Monoclinic Lysozyme at 0.96 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Monoclinic Lysozyme at 0.96 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na209 b:31.9 occ:1.00 O A:HOH448 2.0 42.2 1.0 O A:HOH401 2.7 28.7 1.0 O A:HOH464 3.4 34.2 1.0 CB A:ASN113 3.8 22.2 1.0 O2 A:NO3208 3.8 28.4 1.0 CG A:ASN113 4.0 24.2 1.0 ND2 A:ASN113 4.2 23.8 1.0 OD1 A:ASN113 4.6 30.5 1.0 O A:HOH453 4.6 38.9 1.0 O A:ASN113 4.6 86.2 1.0 CA A:ASN113 4.7 16.9 1.0 C A:ASN113 5.0 45.0 1.0

Sodium binding site 2 out of 2 in the Monoclinic Lysozyme at 0.96 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Monoclinic Lysozyme at 0.96 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na203 b:28.0 occ:1.00 O2 B:NO3201 2.3 33.5 1.0 O B:HOH482 2.8 35.7 1.0 N B:NO3201 3.4 24.2 1.0 O1 B:NO3201 3.6 25.2 1.0 O B:ARG14 3.8 16.5 1.0 CA B:GLY16 3.8 13.1 1.0 N B:GLY16 3.9 14.1 1.0 C B:HIS15 4.1 14.5 1.0 O B:HIS15 4.3 15.6 1.0 O3 B:NO3201 4.6 38.1 1.0 CA B:HIS15 4.7 13.9 1.0 C B:ARG14 4.8 15.4 1.0 NZ B:LYS96 4.9 21.0 1.0

T.Matsumoto, A.Yamano, T.Hasegawa, M.Maeyama. Evaluation of Rigaku Xtalab P200 To Be Published.