Atomistry » Sodium » PDB 3vif-3way » 3w8f
Atomistry »
  Sodium »
    PDB 3vif-3way »
      3w8f »

Sodium in PDB 3w8f: Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate

Enzymatic activity of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate

All present enzymatic activity of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate:
1.1.1.30;

Protein crystallography data

The structure of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate, PDB code: 3w8f was solved by H.Kanazawa, M.Tsunoda, M.M.Hoque, K.Suzuki, T.Yamamoto, A.Takenaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.82 / 1.45
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 62.830, 62.830, 119.290, 90.00, 90.00, 90.00
R / Rfree (%) 14.2 / 16.7

Other elements in 3w8f:

The structure of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate (pdb code 3w8f). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate, PDB code: 3w8f:

Sodium binding site 1 out of 1 in 3w8f

Go back to Sodium Binding Sites List in 3w8f
Sodium binding site 1 out of 1 in the Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:5.2
occ:0.50
O A:HOH434 2.3 10.7 1.0
OXT A:ARG260 2.3 9.6 1.0
O A:HOH454 2.4 10.5 1.0
C A:ARG260 3.4 7.9 1.0
CG1 A:VAL147 3.7 6.1 1.0
O A:ARG260 3.7 9.1 1.0
O A:THR258 4.3 7.1 1.0
CB A:VAL147 4.7 4.8 1.0
O A:TRP257 4.7 4.6 1.0
CA A:ARG260 4.8 6.2 1.0
CA A:THR258 4.8 4.4 1.0
C A:THR258 4.8 4.6 1.0
O A:HOH559 4.9 22.4 1.0
N A:ARG260 4.9 5.4 1.0
O A:HOH520 5.0 21.5 1.0

Reference:

H.Kanazawa, M.Tsunoda, M.M.Hoque, K.Suzuki, T.Yamamoto, A.Takenaka. X-Ray Diffraction of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and Malonate To Be Published.
Page generated: Mon Oct 7 13:54:48 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy