Sodium in PDB 3vi2: Crystal Structure Analysis of Plasmodium Falciparum Omp Decarboxylase in Complex with Inhibitor Hmoa

All present enzymatic activity of Crystal Structure Analysis of Plasmodium Falciparum Omp Decarboxylase in Complex with Inhibitor Hmoa:
4.1.1.23;

The structure of Crystal Structure Analysis of Plasmodium Falciparum Omp Decarboxylase in Complex with Inhibitor Hmoa, PDB code: 3vi2 was solved by Y.Takashima, E.Mizohata, S.R.Krungkrai, H.Matsumura, J.Krungkrai, T.Horii, T.Inoue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.50 / 2.10
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	201.970, 201.970, 44.280, 90.00, 90.00, 120.00
R / Rfree (%)	21.3 / 28.4

The binding sites of Sodium atom in the Crystal Structure Analysis of Plasmodium Falciparum Omp Decarboxylase in Complex with Inhibitor Hmoa (pdb code 3vi2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Crystal Structure Analysis of Plasmodium Falciparum Omp Decarboxylase in Complex with Inhibitor Hmoa, PDB code: 3vi2:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Crystal Structure Analysis of Plasmodium Falciparum Omp Decarboxylase in Complex with Inhibitor Hmoa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure Analysis of Plasmodium Falciparum Omp Decarboxylase in Complex with Inhibitor Hmoa within 5.0Å range:

Sodium binding site 2 out of 3 in the Crystal Structure Analysis of Plasmodium Falciparum Omp Decarboxylase in Complex with Inhibitor Hmoa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure Analysis of Plasmodium Falciparum Omp Decarboxylase in Complex with Inhibitor Hmoa within 5.0Å range:

Sodium binding site 3 out of 3 in the Crystal Structure Analysis of Plasmodium Falciparum Omp Decarboxylase in Complex with Inhibitor Hmoa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure Analysis of Plasmodium Falciparum Omp Decarboxylase in Complex with Inhibitor Hmoa within 5.0Å range: probe atom residue distance (Å) B Occ B:Na325 b:95.1 occ:1.00 CE B:LYS275 4.8 0.5 1.0

Y.Takashima, E.Mizohata, S.R.Krungkrai, Y.Fukunishi, T.Kinoshita, T.Sakata, H.Matsumura, J.Krungkrai, T.Horii, T.Inoue. The in Silico Screening and X-Ray Structure Analysis of the Inhibitor Complex of Plasmodium Falciparum Orotidine 5'-Monophosphate Decarboxylase J.Biochem. V. 152 133 2012.
ISSN: ISSN 0021-924X
PubMed: 22740703
DOI: 10.1093/JB/MVS070